Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51990 101 / 2e-26 O-methyltransferase family protein (.1.2) AT1G77520 99 / 2e-25 O-methyltransferase family protein (.1) AT1G77530 96 / 2e-24 O-methyltransferase family protein (.1) AT4G35150 96 / 3e-24 O-methyltransferase family protein (.1) AT4G35160 95 / 7e-24 O-methyltransferase family protein (.1) AT1G62900 91 / 2e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33030 92 / 9e-23 O-methyltransferase family protein (.1) AT1G63140 91 / 2e-22 O-methyltransferase family protein (.1.2) AT5G53810 91 / 3e-22 O-methyltransferase family protein (.1) AT1G21130 91 / 3e-22 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013945 [exp] 251 / 1e-84 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10033656 [exp] 157 / 1e-47 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 152 / 1e-45 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10015311 [exp] 150 / 8e-45 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10018629 [exp] 145 / 5e-43 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017695 [exp] 135 / 2e-40 AT4G35150 140 / 6e-40 O-methyltransferase family protein (.1) Lus10018628 [exp] 137 / 8e-40 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017691 [exp] 134 / 1e-38 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10008538 [exp] 133 / 2e-38 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059500 [exp] 185 / 2e-58 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1) Potri.004G050400 [exp] 177 / 2e-55 AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 165 / 6e-51 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 164 / 2e-50 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 157 / 1e-47 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 157 / 1e-47 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 154 / 2e-46 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 154 / 2e-46 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 153 / 3e-46 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121800 [exp] 149 / 2e-45 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10005268 pacid=23175311 polypeptide=Lus10005268 locus=Lus10005268.g ID=Lus10005268.BGIv1.0 annot-version=v1.0 ATGGATTGTGTTGTGTTGGATCTACCACAAGTTGTTGATGGCTTGTTAGATGAGAAGAGGCTGAAATTTGTTGGTGGTGACATGTTTGAGTTTGTCCCTT CTGCAGAAGCCATACTGATCAAGTTCGTTCTGCACAACTGGACCGACGAGGACTGTATAAAGATACTAAAGAGATGCAAAGAGGCAATCCAAGAGGAGAA GAAGGGGAAGTTGATTCTGATAGAAATGGTGATCGAGGAATCGGAAAACGAAGGCGAATTGAGCAAGACTTGGCTGTTGATGGACATGGAAATGATGATG TTGTGTCAAGGGAAAGAAAGAACTGAAGCAGAATGGAAGAATCTCTTCTTGGAATCTGGATTTATCAGCTTCAAGATCACTCAAACAGCTCGATTGAAGT CCATCATTGAAGTTCATCCTTGA
AA sequence Show only first row Show all	>Lus10005268 pacid=23175311 polypeptide=Lus10005268 locus=Lus10005268.g ID=Lus10005268.BGIv1.0 annot-version=v1.0 MDCVVLDLPQVVDGLLDEKRLKFVGGDMFEFVPSAEAILIKFVLHNWTDEDCIKILKRCKEAIQEEKKGKLILIEMVIEESENEGELSKTWLLMDMEMMM LCQGKERTEAEWKNLFLESGFISFKITQTARLKSIIEVHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51990			O-methyltransferase family pro...		Lus10005268 [exp]	0	1
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	3.5	0.8802
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10029070 [exp]	5.7	0.7348
					Lus10010526 [exp]	6.5	0.8269
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	6.6	0.8512
AT2G15220			Plant basic secretory protein ...		Lus10013860 [exp]	7.9	0.6718
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015093 [exp]	8.9	0.8026
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	9.2	0.8211
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	12.0	0.7634
					Lus10022511 [exp]	13.0	0.7634
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	13.9	0.7634

Compare expression of checked genes

Lus10005268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.