Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013945 [exp] 180 / 6e-57 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10017699 [exp] 61 / 1e-11 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10033656 [exp] 59 / 4e-11 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10001510 [exp] 57 / 2e-10 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10015311 [exp] 50 / 5e-08 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10024678 [exp] 48 / 2e-07 AT4G35160 64 / 2e-11 O-methyltransferase family protein (.1) Lus10032304 [exp] 48 / 3e-07 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10018628 [exp] 47 / 7e-07 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 43 / 1e-05 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050400 [exp] 87 / 2e-21 AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1) Potri.011G059500 [exp] 87 / 3e-21 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 72 / 5e-16 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 71 / 2e-15 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 62 / 4e-12 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.013G121800 [exp] 60 / 1e-11 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 60 / 2e-11 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 58 / 6e-11 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 57 / 2e-10 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 55 / 8e-10 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10005269 pacid=23175319 polypeptide=Lus10005269 locus=Lus10005269.g ID=Lus10005269.BGIv1.0 annot-version=v1.0 ATGCAAATCCTCGTCCACTCAGGATTCTTCTCCTTCGAAGGTGATGGTTATGTCCTTACACCATGTTCTGAGATCCTAGTCAAGGACAGCCCGACTAGCT TGGCATCAACCGTTACAGCAATCCTCGATCCCCTCCTTGTGAACCCATGGTTCTCTTTCACTGACTTCCTTCTACATGGTGATGATTCGACCTCGAGTTC GAGTCATCACCCTGTGTTTGAATTTGAGACCCACCACCGTGGTGGGCTCATCGAGTCGTTGCACGAAGCAATGGCTAGCGATTCGAGGACTGTGAGAACG ATTGTCGATGAACATGGAGAGGTCTATGAAGGGTTGGGATCTCTTGTTGGTTCTGGTGGTGGATTGTGA
AA sequence Show only first row Show all	>Lus10005269 pacid=23175319 polypeptide=Lus10005269 locus=Lus10005269.g ID=Lus10005269.BGIv1.0 annot-version=v1.0 MQILVHSGFFSFEGDGYVLTPCSEILVKDSPTSLASTVTAILDPLLVNPWFSFTDFLLHGDDSTSSSSHHPVFEFETHHRGGLIESLHEAMASDSRTVRT IVDEHGEVYEGLGSLVGSGGGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005269 [exp]	0	1
					Lus10015849 [exp]	6.7	0.6255
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	9.4	0.6519
					Lus10043183 [exp]	11.5	0.6291
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	12.0	0.6427
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	15.0	0.6333
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	20.0	0.6154
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	21.7	0.6154
AT1G70780			unknown protein		Lus10039287 [exp]	23.2	0.6154
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	24.8	0.5894
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000668 [exp]	28.0	0.5888

Compare expression of checked genes

Lus10005269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.