Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24600 251 / 3e-83 Protein of unknown function, DUF599 (.1.2) AT3G18215 204 / 7e-65 Protein of unknown function, DUF599 (.1) AT4G31330 132 / 3e-37 Protein of unknown function, DUF599 (.1) AT5G10580 119 / 3e-32 Protein of unknown function, DUF599 (.1.2) AT5G24790 108 / 8e-28 Protein of unknown function, DUF599 (.1) AT5G46060 104 / 2e-26 Protein of unknown function, DUF599 (.1) AT5G43180 82 / 3e-18 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013947 [exp] 392 / 3e-138 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 238 / 6e-78 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 237 / 2e-77 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 212 / 4e-68 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 140 / 1e-40 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 129 / 4e-36 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 127 / 2e-35 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 120 / 1e-32 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10020172 [exp] 90 / 2e-21 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001300 [exp] 270 / 6e-91 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 265 / 5e-89 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.001G372900 [exp] 123 / 1e-33 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.006G278000 [exp] 121 / 6e-33 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 93 / 4e-22 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 75 / 2e-15 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10005272 pacid=23175326 polypeptide=Lus10005272 locus=Lus10005272.g ID=Lus10005272.BGIv1.0 annot-version=v1.0 ATGCAGGAGATATCAGTTCTGGATTTCACATTGGTCCCGCTGGGACTGATTCTGATGGTGACGTATCACTTGTGGCTACTCTCCAGAGTGTTGAAATACC CCTCCAACACCACCATCGGCGTCAACGCCATCAGCCATCACTTGTGGCTACTCTCCAGAGTGTTGAAATACCCCTCCAACACCACCATCGGCGTCAACGC CATCCGCCGCCGCTTCTGGGTTCATGCCATGATGGCGGAACCATCGAAGAATGGGGTATTGGCAGTTCAGACCCTGCGAAACAACATAATGGCGTCAACA CTTTTGGCGACCACGGCCATCATGCTCTGCTCCCTCATCGTCATGCTTCTCGCCGGCAACCCAGGGACTCGGACGACGGAGGGTATAGTGTTGGGAGACA AGACCAAAGTTGGCATATCCCTCAAGTTCTTCTCCCTCATGCTCTGCTTCCTCACCGCCTTCTTGATGACCGTCCAGTCCATCAGGTACTACAGTCATGC AAGTTTGCTCATCAACGTCCCTATGCCACCGAAGCCAGCTCACCACAACGACGACTGCGGCCGAGATTATCTTCTCACCGGCGAGTACGTGGCCAGGTCG GTGAACAGAGGAGGATATTTCTGGTCATTAGGACTCAGGGGATTCTACTTCTCCCTCCCTCTGTTTATGTGGATCTTTGGTCCCATCCCAATGTTCTCCA GCTGCCTAGTCCTTGTCTTTGTGCTCTATTTCCTCGACTTCACTTCCGATGCCGGCGAGATGGACCTCAAGACGATCACTCATCATGGACTTCCCGACAA TAGTATCACATCAATGTTCTACAGCGGCGGCGGAGGCGGCGATCATGAGGAAGATGGTCACCAGATTCCAGGCCGTTGTAGTATCTGA
AA sequence Show only first row Show all	>Lus10005272 pacid=23175326 polypeptide=Lus10005272 locus=Lus10005272.g ID=Lus10005272.BGIv1.0 annot-version=v1.0 MQEISVLDFTLVPLGLILMVTYHLWLLSRVLKYPSNTTIGVNAISHHLWLLSRVLKYPSNTTIGVNAIRRRFWVHAMMAEPSKNGVLAVQTLRNNIMAST LLATTAIMLCSLIVMLLAGNPGTRTTEGIVLGDKTKVGISLKFFSLMLCFLTAFLMTVQSIRYYSHASLLINVPMPPKPAHHNDDCGRDYLLTGEYVARS VNRGGYFWSLGLRGFYFSLPLFMWIFGPIPMFSSCLVLVFVLYFLDFTSDAGEMDLKTITHHGLPDNSITSMFYSGGGGGDHEEDGHQIPGRCSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24600			Protein of unknown function, D...		Lus10005272 [exp]	0	1
AT5G66740			Protein of unknown function (D...		Lus10014323 [exp]	1.0	0.9042
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	2.0	0.8856
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	4.5	0.8585
					Lus10010271 [exp]	11.7	0.8496
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	14.4	0.8395
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10002576 [exp]	18.4	0.8150
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	25.4	0.7796
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	36.6	0.8492
					Lus10012132 [exp]	40.0	0.8175
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	43.3	0.8472

Compare expression of checked genes

Lus10005272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.