Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28510 142 / 1e-43 Optic atrophy 3 protein (OPA3) (.1) AT3G58150 87 / 6e-22 Optic atrophy 3 protein (OPA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013949 [exp] 215 / 2e-72 AT1G28510 238 / 3e-81 Optic atrophy 3 protein (OPA3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059800 [exp] 163 / 7e-52 AT1G28510 186 / 9e-61 Optic atrophy 3 protein (OPA3) (.1) Potri.013G123000 [exp] 133 / 4e-40 AT1G28510 174 / 3e-56 Optic atrophy 3 protein (OPA3) (.1) Potri.019G092900 [exp] 58 / 1e-11 AT1G28510 47 / 9e-08 Optic atrophy 3 protein (OPA3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0225 [flax] [poplar] FtsL PF04977 [flax] [poplar] DivIC Septum formation initiator CL0225 [flax] [poplar] PF07047 [flax] [poplar] OPA3 Optic atrophy 3 protein (OPA3)
Representative CDS sequence Show only first row Show all	>Lus10005273 pacid=23175327 polypeptide=Lus10005273 locus=Lus10005273.g ID=Lus10005273.BGIv1.0 annot-version=v1.0 ATGGTGTTGCCATTGCTGAAGCTGGGAACTTTAGTGGTGAAGACGCTGAGCAAGCCGCTGGCTGCTAAGCTGAAGCAGCAGGCAGCTTACCATCCCAAGT TCCGCCAAATCATCGTCGACATGGCGCAGTTGAATCACCGAATCTCGACGAGGATGCAACGGCGGATCTACAGCCACGCCACGGATGTGGCGATTCGGCC GTTGAATGAGGAGAAAGCTGTCCAGGCTGCCGTCGATCTCATCGGCGAGTTGTTCGTTTTCACGGTTGCAGGAGCTGTTGTAGTATTTGAGGTGCAAAGA AGTGCCAAATCAGAGGCTAGGAAAGAAGCAGCAAGGAAGCAAGAACTCGAGGCAATGAGGCAAAGAGATGAGGACTTGGCAAAAGAAGTGGAGAACCTAA GACAAAAGCTGGAAGAGATCGAGCAACTTGCTAGAGGTCGAGGACTCAGCGGCCTTCTTCACTTGAAACCCTCGATCAAGGAGCCCGAAAAAACGATGAA ACCAGCATAA
AA sequence Show only first row Show all	>Lus10005273 pacid=23175327 polypeptide=Lus10005273 locus=Lus10005273.g ID=Lus10005273.BGIv1.0 annot-version=v1.0 MVLPLLKLGTLVVKTLSKPLAAKLKQQAAYHPKFRQIIVDMAQLNHRISTRMQRRIYSHATDVAIRPLNEEKAVQAAVDLIGELFVFTVAGAVVVFEVQR SAKSEARKEAARKQELEAMRQRDEDLAKEVENLRQKLEEIEQLARGRGLSGLLHLKPSIKEPEKTMKPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28510			Optic atrophy 3 protein (OPA3)...		Lus10005273 [exp]	0	1
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	10.2	0.8947
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	11.4	0.9029
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	16.6	0.8980
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	18.3	0.8960
AT1G43580			Sphingomyelin synthetase famil...		Lus10042814 [exp]	18.8	0.8878
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	24.4	0.8867
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	27.0	0.8940
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	29.6	0.8750
					Lus10021703 [exp]	30.8	0.8695
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	34.6	0.8890

Compare expression of checked genes

Lus10005273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.