Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 530 / 0 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 328 / 2e-106 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013950 [exp] 511 / 1e-180 AT1G28520 371 / 6e-128 vascular plant one zinc finger protein (.1.2) Lus10017700 [exp] 297 / 2e-94 AT1G28520 345 / 7e-115 vascular plant one zinc finger protein (.1.2) Lus10033657 [exp] 294 / 2e-93 AT1G28520 339 / 1e-112 vascular plant one zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050900 [exp] 634 / 0 AT1G28520 689 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.011G060000 [exp] 628 / 0 AT1G28520 682 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.013G123100 [exp] 409 / 8e-138 AT1G28520 480 / 1e-167 vascular plant one zinc finger protein (.1.2) Potri.019G092800 [exp] 409 / 1e-137 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005274 pacid=23175318 polypeptide=Lus10005274 locus=Lus10005274.g ID=Lus10005274.BGIv1.0 annot-version=v1.0 ATGGGGAAGGGTTCGAAGCCGAACTGCAAATCGACCTCACACAGGCAGTTCAAGGACAGGGCGAAGAACCGAGTGGACGATCTCCAAGGGATATTCGTGG ATCTCCAGTTCGCGAGGAAGGAGAGCAGGAATGTCGACGTGGCGGTGCTGGAGGAGCAGGTTCATCAGATGCTACGTGAGTGGAAGTCTGAGCTCAACGA GCCTTCTCCTGCTAGCTCTTTGCAACAAGGTGCGAGTCTTGGATCCTTCTCCACGGATATATGCAGGCTGTTGCAGCTATGTGAGGAAGAGGATGATGCC ACTAGCACTTTAGCTGTGCCGAAGCCTGAGCCTAATGATCAGACTCTTCAGGATGTTGATAGTGCAATGTTCCCTCAGACCTATGGATTGACTCATGGAC AACAGGAGCAATGTTACCCATTTGTCACTCAATGCAAAGATACTCCTTCAGCAGCTCGAGGGGTAGTTGTGAGTAGCTTGGAAGGTACTCAGTTGGACTG CCATCATCAATTTGATCTGCCTCAAAACTTTGAGCAAAACTTCTTTATCGGCTTTAACGGTGTGCATCTATTTGGTGAAGATGGCAACCAGAATGTTGCT ACCTATCTCCCAGTGTCATGGAATTTTGTTTGCGTGGGGTGTTTACAGGGTGCGAGTCTTGGATCCTTCTCCACGGATATATGCAGGCTGTTGCAGCTAT GTGAGGAAGAGGATGATGCCACTAGCACTTTAGCTGTGCCGAAGCCTGAGCCTAATGTTCAGACTCTTCAGGATGTTGATAGTGCAATGTTCCCACAGAG CTATGGATTCACTCATGGACAACAGGAGCAATGTTACCCATTTGTCACTCAATGCAAAGATACTCCTTCAGCAGCTCGAGGGGTAGTTGTGAGTAGCTTG GAAGGTACTCAGTTGGACTGCCATCATCAATTTGATCTGCCTCAAAACTTTGAGCAAAACTTCTTTATCGGCTTTAACGGTGTGCATCTATTTGGTGAAG ATGGCAACCAAAATGTTGCTACCTATCTCCCAGGCATATGCCCTCCACCTTCAGCTTTCTTAGGCCCAAAATGCGCCCTCTGGGATTGTGCTCGGCCAGC ACAAGGCGGGTTGGACTTTTGGCAAATGTGCTGCAGTAGGTTTCATCATGACCTAGCTCTGAACGAAGGCCTCCCTGGAACGGGGCCTGTTCTTAGGCCG GGAGGAATTGGCCTTAAAGACGGCTTATTGTTTGCCGCACTTGGTTCGAAGGCAGAGGGGAAAGAAGTTGGTATCCCGGAATGCGAAGGAGCTGCAACTG CCAAGTCTCCTTGGAATGCACCTGAACTATTCAATCTCTCAGTCCTTGAAGGCGAAATGATCCGTGAATGGCTCTTCTTCGACAAGCCCCGTCGAGCATT TGAGAGTGGCAACAGGAAGCAGAGGTCACTACCAGACTACAGCGGTCGTGGATGGCACGAGTCAAGGAAACAAGTAATGAACGAGTTCGGAGGGCTGAAA CGATCCTATTATATGGACCCTCAGCCACTGAACAACTTCGAATGGCATCTCTATGAGTACGAGATCACCAAGTGCGACGCTTGTGCGCTGTACCGACTCG AACTGAAAGCAGTCGACGGTAAGAAGAGCGCCAAGGGAAAGCTCTCGAACGATTCGGTCGCTCATCTGCAGAAACAGATGGGAAGGCTCACAGCTGAGTT CCCAACTGATAACAAACGCCCTGCTAAAGGAAGACCCAAGATGGATACCAAACTCGGAAATCCTTATCCGGCCGCTAACCGGGTGGTTCCCACGACCGAA GCGTTCGAGTATGGGCTCGGATACAACTACCTCGGCGATAACATAGATGATTACTTCGTGACGTGA
AA sequence Show only first row Show all	>Lus10005274 pacid=23175318 polypeptide=Lus10005274 locus=Lus10005274.g ID=Lus10005274.BGIv1.0 annot-version=v1.0 MGKGSKPNCKSTSHRQFKDRAKNRVDDLQGIFVDLQFARKESRNVDVAVLEEQVHQMLREWKSELNEPSPASSLQQGASLGSFSTDICRLLQLCEEEDDA TSTLAVPKPEPNDQTLQDVDSAMFPQTYGLTHGQQEQCYPFVTQCKDTPSAARGVVVSSLEGTQLDCHHQFDLPQNFEQNFFIGFNGVHLFGEDGNQNVA TYLPVSWNFVCVGCLQGASLGSFSTDICRLLQLCEEEDDATSTLAVPKPEPNVQTLQDVDSAMFPQSYGFTHGQQEQCYPFVTQCKDTPSAARGVVVSSL EGTQLDCHHQFDLPQNFEQNFFIGFNGVHLFGEDGNQNVATYLPGICPPPSAFLGPKCALWDCARPAQGGLDFWQMCCSRFHHDLALNEGLPGTGPVLRP GGIGLKDGLLFAALGSKAEGKEVGIPECEGAATAKSPWNAPELFNLSVLEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLK RSYYMDPQPLNNFEWHLYEYEITKCDACALYRLELKAVDGKKSAKGKLSNDSVAHLQKQMGRLTAEFPTDNKRPAKGRPKMDTKLGNPYPAANRVVPTTE AFEYGLGYNYLGDNIDDYFVT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	0	1
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	1.0	0.9188
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	1.4	0.8756
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	8.9	0.7901
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	16.2	0.8308
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	18.5	0.7479
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	19.1	0.7524
AT5G25820			Exostosin family protein (.1)		Lus10002799 [exp]	20.6	0.7711
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10033884 [exp]	22.0	0.7996
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	23.7	0.7267
AT1G49000			unknown protein		Lus10042953 [exp]	24.2	0.7871

Compare expression of checked genes

Lus10005274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.