Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42350 92 / 1e-23 RING/U-box superfamily protein (.1) AT2G42360 89 / 2e-22 RING/U-box superfamily protein (.1) AT3G16720 86 / 7e-21 ATL2 TOXICOS EN LEVADURA 2 (.1) AT2G34000 77 / 1e-18 RING/U-box superfamily protein (.1) AT1G76410 74 / 3e-17 ATL8 RING/U-box superfamily protein (.1) AT1G04360 77 / 4e-17 RING/U-box superfamily protein (.1) AT2G27940 75 / 5e-17 RING/U-box superfamily protein (.1) AT4G15975 74 / 9e-17 RING/U-box superfamily protein (.1) AT4G09100 71 / 4e-16 RING/U-box superfamily protein (.1) AT4G40070 73 / 6e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002194 [exp] 83 / 4e-20 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10016163 [exp] 82 / 5e-20 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10021197 [exp] 77 / 3e-17 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10037490 [exp] 76 / 1e-16 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10011702 [exp] 74 / 5e-16 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10006493 [exp] 73 / 6e-16 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10043426 [exp] 72 / 6e-16 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 72 / 8e-16 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10031515 [exp] 73 / 1e-15 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063100 [exp] 118 / 9e-34 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 90 / 1e-22 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 79 / 8e-18 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 77 / 8e-18 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.001G279200 [exp] 77 / 9e-18 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.008G165900 [exp] 78 / 1e-17 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 76 / 1e-17 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 77 / 2e-17 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 77 / 2e-17 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.003G073300 [exp] 76 / 5e-17 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005275 pacid=23175316 polypeptide=Lus10005275 locus=Lus10005275.g ID=Lus10005275.BGIv1.0 annot-version=v1.0 ATGGGCGACGAAGAAGAAACCGGCGCTGCCCGGAGCGGCCGGAGGCTCATGCTGTTCGCAATACTATCCCTAATCATCGTCGTCATCCTCATGGTGGTCC TCCACCTCTACACCAGGCTCCGCCTCAGCCACCGCATGCGCCGCCGCGACGATCGCCGAATCCGGCAGCAGATTGTGGCGGTGGAATCGCTGAATTTCAC ACTCGTCGAGGAGCCGCCGAAACGGGGGCTGGATCCTTCGGTCGTCGCTTCACTGCCGACTTTTAGCTACAAGCTGGACTCCGCTAGTGATTCGGAGCCG ATTGAGTGCTCTGTTTGTTTGGGATCGGTGGTTGAGGGTTCGACGGTGAAAGAGTTGCCCAATTGTAAGCATTTGTTTCATGTTGAGTGTATAGATTTGT GGCTTGGCGGGAGTACGAATTGCCCCAATTGTCGGGCTGTATGA
AA sequence Show only first row Show all	>Lus10005275 pacid=23175316 polypeptide=Lus10005275 locus=Lus10005275.g ID=Lus10005275.BGIv1.0 annot-version=v1.0 MGDEEETGAARSGRRLMLFAILSLIIVVILMVVLHLYTRLRLSHRMRRRDDRRIRQQIVAVESLNFTLVEEPPKRGLDPSVVASLPTFSYKLDSASDSEP IECSVCLGSVVEGSTVKELPNCKHLFHVECIDLWLGGSTNCPNCRAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42360			RING/U-box superfamily protein...		Lus10005275 [exp]	0	1
AT5G03450			Transducin/WD40 repeat-like su...		Lus10042191 [exp]	3.6	0.8952
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	8.7	0.8988
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	10.1	0.9210
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	14.5	0.8986
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	17.4	0.9195
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009679 [exp]	23.4	0.9170
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	27.3	0.9103
AT4G12070			unknown protein		Lus10031257 [exp]	32.2	0.8722
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	35.2	0.8987
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	38.1	0.8586

Compare expression of checked genes

Lus10005275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.