Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05200 216 / 4e-62 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G17260 213 / 1e-60 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G32390 211 / 1e-60 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G29100 211 / 2e-60 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT4G35290 211 / 3e-60 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G29110 209 / 1e-59 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29120 205 / 4e-58 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G32400 203 / 2e-57 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G24720 202 / 6e-57 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 200 / 3e-56 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 750 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 626 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10026235 [exp] 227 / 2e-65 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026553 [exp] 221 / 6e-64 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 214 / 2e-61 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 213 / 1e-60 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10026913 [exp] 212 / 1e-60 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 208 / 2e-60 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10016031 [exp] 209 / 1e-59 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052400 [exp] 487 / 3e-164 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 486 / 4e-164 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062900 [exp] 367 / 5e-118 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 350 / 7e-112 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.011G062750 [exp] 335 / 3e-111 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 332 / 1e-104 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G063000 [exp] 235 / 9e-74 AT1G05200 185 / 7e-52 glutamate receptor 3.4 (.1.2) Potri.018G013000 [exp] 244 / 3e-72 AT2G29120 908 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028500 [exp] 241 / 3e-71 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 233 / 3e-68 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10005276 pacid=23175317 polypeptide=Lus10005276 locus=Lus10005276.g ID=Lus10005276.BGIv1.0 annot-version=v1.0 ATGTTGAAAGTAGACGGTCCGGTGACTTGGCCCGGGGACATGAAGAGGGAGCCGAAAGGATGGGGGATGCCGACGGCGGCTAAACCATTTGAAAAGTTTA TTAAGGTATGGAGCGACGGCAAGAAGAGGTACAAAGGCTTTTGCATCTATCTTTTCAAGAAGGTGATCGAGGTTCTCAACTACGACCTTCCTTACGAGTT CGTACCTTACTACGGTAAGTACGAGGACTTAGTGGACCATGTGGCCAACAAGACGTACGATGCGATCGTTGGAGACATGGCCATTCTAGCACATAGGTCG GATAAAGTGGAGTTCACGCAACCATTTGTGGAATCGGGTCTTTCGATGATCATACCGGCCAAGTCGGAGAAATCAGCGTGGATGTTCATGAAGCCATTCA CCATGGAAATGTGGCTGGTAACCGGGACAATCTTGATCTATACTATGCTCATCATTTGGTTCTTGGAGCACCAAAGCAACCCGAACTTCAAAGGTCCATT GAGGAACCAGATGGGGACGGCTCTTCTCTTCACTTTCTCCTCGCTCTTCTTCGCCCACAGGGAGAAAGTGTACAGCAACCTGACTCGAGTCGTGCTGGTG GCACGGCTGTTCGTGGTGTTGATTCTAAACTCGAGCTACACAGCCAGTTTGACATCAATGCTCACAGTCCTCCAACCGAAGCCCAACGTAAGCAACATCG ACTGGCTTCGTCGGAACGGGCTTAGAGTCGGGTGCCACGGAGATTCGTTCGTGAGGAACTACCTGGAGAAGGTGCTGGAATTCAAAGTGGGCAACATCCA GAATGTAGACAGCGAGTACAAGTACGGAGATGAATTCGACACCAACCACATCTCTGCTGCATTTCTGGAGCTTCCGTACCAGGACTTCATCAACCACTAC TGCAGGTGGTTCACCGCCACAGTACAGACATTTCGATTCGGAGGACTGGGGTTCGTGTTCCAGAAGGGGTCTCCGATAGCAGCTGACGTGTCGAAGGCCA TTCTTAAGCTGTCCGAAGACGGACAGCTGAAGAAATTGGAAGAGACTTGGTTCGCTCTGTCGAGAGAGTGCTCGTCTAGTTCGAGCGAGGAAGACGGAGC TACTGAAAGCTTGAGCCTGCAAAACTTCTGGTATTGCAAGGGAGAAGATCACCGAGGAGATCTTAGTGTCTGGAATAAGTCTGTTATGTTAGCAAAGTAC CTTTACTATGGTAAGGCGGCTATCGGAAGAGTCTCTCCGATACCGACAGTGATGATAGCTTCATCACCTGGTGCTGGTGACCCTCCTCAGACTCCTGAGG ATCCAAGGATTCCAGCTACTGTTGTATAG
AA sequence Show only first row Show all	>Lus10005276 pacid=23175317 polypeptide=Lus10005276 locus=Lus10005276.g ID=Lus10005276.BGIv1.0 annot-version=v1.0 MLKVDGPVTWPGDMKREPKGWGMPTAAKPFEKFIKVWSDGKKRYKGFCIYLFKKVIEVLNYDLPYEFVPYYGKYEDLVDHVANKTYDAIVGDMAILAHRS DKVEFTQPFVESGLSMIIPAKSEKSAWMFMKPFTMEMWLVTGTILIYTMLIIWFLEHQSNPNFKGPLRNQMGTALLFTFSSLFFAHREKVYSNLTRVVLV ARLFVVLILNSSYTASLTSMLTVLQPKPNVSNIDWLRRNGLRVGCHGDSFVRNYLEKVLEFKVGNIQNVDSEYKYGDEFDTNHISAAFLELPYQDFINHY CRWFTATVQTFRFGGLGFVFQKGSPIAADVSKAILKLSEDGQLKKLEETWFALSRECSSSSSEEDGATESLSLQNFWYCKGEDHRGDLSVWNKSVMLAKY LYYGKAAIGRVSPIPTVMIASSPGAGDPPQTPEDPRIPATVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10005276 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040762 [exp]	4.7	0.8364
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10040763 [exp]	15.1	0.7838
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	15.7	0.7800
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	31.9	0.7698
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	33.2	0.8189
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	35.3	0.8238
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	41.4	0.8099
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	51.0	0.8276
AT1G04985			unknown protein		Lus10015157 [exp]	52.1	0.8201
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	70.0	0.8080

Compare expression of checked genes

Lus10005276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.