Plant FIBer expression Database

Lus10005277 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34040 749 / 0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
AT1G29030 721 / 0 Apoptosis inhibitory protein 5 (API5) (.1)
AT3G19515 217 / 1e-61 unknown protein
AT1G23935 164 / 3e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013953
[exp]
1010 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Lus10025428
[exp]
789 / 0 AT2G34040 769 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G062500
[exp]
792 / 0 AT2G34040 782 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Potri.004G052300
[exp]
783 / 0 AT2G34040 787 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF05918 API5 Apoptosis inhibitory protein 5 (API5)
Representative CDS sequence
>Lus10005277 pacid=23175312 polypeptide=Lus10005277 locus=Lus10005277.g ID=Lus10005277.BGIv1.0 annot-version=v1.0
ATGAGCGAGCTACTGGACGAGGAATCCAAGCACATCGAGAAGCTTTACGAGTTCGGCGAGCGGCTGAACGAGGCCAAGGACAAGTCTCAGAATGTTGCTG
ATTATCAAGGCATTATTGATGCTGCTAAAAGTAGTGTGAAGGCAAAGCAGCTGGCGGCACAGCTCATCCCGCGCTTCTTCAAGTTCTTCCCTCAGCTCTC
TAGCCAGGCCGTTGACGCTCATCTGGATTTGATTGAGGAAGAAGACATTGGGGTGAGGGTACAAGCAATTAGAGGCCTTCCGCTATTCTGCAAGGACACG
CCTGGGATTTTGATCAAGATTGTGGACATTCCTGTTCAACTCCTTGGAACAGATGAAGCTGTGGAGAGGGATGCAGTGCATAAGGCCCTTATGTCCTTGT
TGAGGCAGGATGTTAAAGTTTGTCTAACTGCATTGTTCAAACACGTTGTCACTCCTGAGCAAATTGGCACTGCTGATGAACCAAGCCCAGAGGAAGTGTT
CCGTCGCAAAGTTCTTAGCTTCATTAGGGATAAGGTGTTCCCCCTCAAATCTGAACTCCTGAGGCCTCAGGAGGAGATGGAACGACATATTACTGATTTG
ATTAAAAAGAATTTAGAAGATGTGACTGGTACTGAATTCAAGATGTTTATCGACTTCTTGAAGAGTTTGAGCATATTTGGGGAAAAAGCCCCCCCTGAGG
GAACAAAAGAACTAGTTGAAATAATTGAAGAACAGGCTGATCTACATGCACAGTTCAGTGTTGAAGATACAGATCATATTGACAGATTGATATCATGCTT
GTATATGGCCCTTCCATTTTTCTTGAGAGGAGCATCCTGCAGCAAATTCCTCAACTACTTGAACAACAACATAATTCCTGTTTTTGATCAGGTTCCTGAA
GATCGGAAACTCGATATGCTGAAAGCGCTCGCGGAAATTTCTCCGTACACAGCTTCTCAAGAGTCGCGCCAAATTCTTCCTTCTGTTGTTCAACTTTTGA
AGAAATACATGCCGCTAAAGAAGACCGGGGGAGAGACAAACTTTACCTATGTCGAGTGCTTATTATATGCTTTTCATCATTTGGCTAGCAAGACTCCCAA
TGCCACGAATGGTTTATGCGGTTACAAGATAGTAACTGGCCAGCCATCAGATAGACTTGGCGAGGACTTCTCTGAACTCTACAAGGAGTTTACCGAGAGG
TTGACTAATGTGGAAGACCTTACTAAGGCTACAATGAAAAAATTAACACAGGGAATGACAGAGCATCATAAACCAACATTAGCAGCAAAATCAGATGAAG
CAAAGGAAGCAATCAAAGTCCAGAAACAGAACGCCACAACTGGATTAAGGACCTGCAATAACATTTTGGCAATGTCAAAGCCTTTGCATGCAAAAACGCC
ATCATTTATCCGAGACAAGAGCATCGTTCTTTCCTGGAAAGAAGCACCTAAGCCTTCCGTGCCATCCAATACGGCAGCAACTGGAGCCAAACGACCTTCA
TCAGCTGATAATGGATCAGGGAAGGTAGTGAAGAAGGGACGTGGCGGTGGTGGTGGTGGCGCACAGAACCAACTCGTTAATCGGGCATTTGAAGGCATAG
GGAGAGGAGGCGGTCATCTAAGGGGTAGGGGAAGAGGCAGAGGAGGGTGGGGTGGACGTGGAAGAGGCCGAGGTTTTCGCTAG
AA sequence
>Lus10005277 pacid=23175312 polypeptide=Lus10005277 locus=Lus10005277.g ID=Lus10005277.BGIv1.0 annot-version=v1.0
MSELLDEESKHIEKLYEFGERLNEAKDKSQNVADYQGIIDAAKSSVKAKQLAAQLIPRFFKFFPQLSSQAVDAHLDLIEEEDIGVRVQAIRGLPLFCKDT
PGILIKIVDIPVQLLGTDEAVERDAVHKALMSLLRQDVKVCLTALFKHVVTPEQIGTADEPSPEEVFRRKVLSFIRDKVFPLKSELLRPQEEMERHITDL
IKKNLEDVTGTEFKMFIDFLKSLSIFGEKAPPEGTKELVEIIEEQADLHAQFSVEDTDHIDRLISCLYMALPFFLRGASCSKFLNYLNNNIIPVFDQVPE
DRKLDMLKALAEISPYTASQESRQILPSVVQLLKKYMPLKKTGGETNFTYVECLLYAFHHLASKTPNATNGLCGYKIVTGQPSDRLGEDFSELYKEFTER
LTNVEDLTKATMKKLTQGMTEHHKPTLAAKSDEAKEAIKVQKQNATTGLRTCNNILAMSKPLHAKTPSFIRDKSIVLSWKEAPKPSVPSNTAATGAKRPS
SADNGSGKVVKKGRGGGGGGAQNQLVNRAFEGIGRGGGHLRGRGRGRGGWGGRGRGRGFR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34040 Apoptosis inhibitory protein 5... Lus10005277
[exp]
0 1
AT3G06030 AtANP3, MAPKKK1... NPK1-related protein kinase 3 ... Lus10010519
[exp]
14.1 0.8744
AT5G15610 Proteasome component (PCI) dom... Lus10013192
[exp]
14.8 0.8277
AT3G02530 TCP-1/cpn60 chaperonin family ... Lus10033546
[exp]
16.5 0.8316
AT5G41970 Metal-dependent protein hydrol... Lus10008867
[exp]
26.3 0.8319
AT4G37630 CYCD5;1 cyclin d5;1 (.1.2) Lus10007735
[exp]
26.6 0.8355
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10027331
[exp]
27.0 0.8550
AT2G02130 PDF2.3, LCR68 low-molecular-weight cysteine-... Lus10004290
[exp]
27.5 0.8344
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10039033
[exp]
31.6 0.8513
AT1G01110 IQD18 IQ-domain 18 (.1.2) Lus10012608
[exp]
37.6 0.8326
AT3G06030 AtANP3, MAPKKK1... NPK1-related protein kinase 3 ... Lus10034060
[exp]
40.2 0.8457

Lus10005277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.