Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34060 437 / 4e-151 Peroxidase superfamily protein (.1) AT5G14130 275 / 6e-88 Peroxidase superfamily protein (.1) AT4G18460 263 / 7e-86 D-Tyr-tRNA(Tyr) deacylase family protein (.1) AT5G67400 252 / 5e-79 RHS19 root hair specific 19 (.1) AT2G18980 251 / 1e-78 Peroxidase superfamily protein (.1) AT4G37520 249 / 8e-78 Peroxidase superfamily protein (.1.2) AT4G37530 249 / 1e-77 Peroxidase superfamily protein (.1.2) AT5G40150 244 / 6e-76 Peroxidase superfamily protein (.1) AT3G49960 243 / 1e-75 Peroxidase superfamily protein (.1) AT1G24110 242 / 2e-75 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013955 [exp] 623 / 0 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10039445 [exp] 258 / 2e-81 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10012540 [exp] 254 / 8e-80 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10010716 [exp] 252 / 5e-79 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10011079 [exp] 252 / 9e-79 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10032035 [exp] 244 / 5e-76 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10004234 [exp] 244 / 1e-75 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 243 / 2e-75 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10001442 [exp] 239 / 5e-74 AT4G30170 475 / 7e-170 Peroxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052100 [exp] 481 / 5e-168 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.011G062300 [exp] 458 / 2e-158 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 303 / 1e-98 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.011G062200 [exp] 276 / 3e-90 AT4G18460 276 / 2e-96 D-Tyr-tRNA(Tyr) deacylase family protein (.1) Potri.017G064100 [exp] 259 / 5e-82 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G351000 [exp] 259 / 7e-82 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 258 / 2e-81 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.001G329200 [exp] 255 / 2e-80 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G053400 [exp] 254 / 5e-80 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.012G076500 [exp] 252 / 7e-79 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0617 [flax] [poplar] PF02580 [flax] [poplar] Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Representative CDS sequence Show only first row Show all	>Lus10005278 pacid=23175320 polypeptide=Lus10005278 locus=Lus10005278.g ID=Lus10005278.BGIv1.0 annot-version=v1.0 ATGGCAATTCTGCCACACTCTCCATCCACTTTCCTCTACATTTCTCTTATCATTCTTCTTCTTCTTCACATTTCCTCAGCCACCGGCGCAGCCACTAACC GCCGTCGGCCACGTCAGCTCTCCGTCAACTACTACGCCAGGACATGTCCACATCTTGAGCAGCTCGTCGGCTCAGTCACTTCCCAGCAGTTCAAGGTGTC TCCCGTTTCCGGTGCAGCCACCATCCGCCTCTTCTTCCACGACTGCTTCGTCCAGGGCTGTGACGGGTCAATTCTGATGTCGACGAAGCCAGGAAGCAGA GAATTGGCAGAGAAGGAAGCAGAGGATAATAAGGACCTGAGAGCAGAAGGATACGACACCGTTTTCAAAGCCAAGTCCCTCGTTGAAACCAAGTGCCCCG GCGCCGTCTCTTGCTCCGACATCCTCGCCATTGCCGCCCGTGACTATGTCCACTTAACAGGTGGACCATACTACCAAGTGAAGAAAGGTAGATTTGACGG GAAAACATCCAAGGCAACAACAGTACCCGGCAACATTCCACGGCCAAATTCGACCGTCGATGCCCTCTTTACACTCTTCCGAACCAAAGGCCTATCGTTG CAAGACATGGTGGTCCTGTCCGGAGCACACACGATCGGATTTGCGCACTGCAAGCAATTCGTCAGCAGGCTGTACGACTACAAGGGCACAAAAAACCCTG ACCCAACCCTGGACCCAAGGCTATTGAAGGAACTGAGGATGTCGTGCCCACGGGTCGGGTCGAACGACGGGGTAGTGGTTCCGTTCGATGTTACGACGCC GTTTATGTTTGATCACGCTTACTACTTGAACTTGGAAGGAAGATTGGGCCTACTGGGCTCGGATCAGGGCCTGTGGATGGATCCCAGGACCAAGGGTGTG GTCCAGGAGATGGGGAGGGATAGAGGCAAGTTTCTTGGGATGTTTGGTTTGGCTATGGAGAAGATGGGGGATATTGGTGTTAAGAGAGGGAGGAGACATG AAGCAATCAAAGGAAATGACTTGCTCATTGGAAAGAATGAGGCTACATGTTACAGACTGCAGTCTAGGCCCAATTTCCTTAAACAAGGTCCATACAACTC AAAACACTTCCCTGATAAAGTAAAAATGCATCGCTCCCTTTCCTCTACTCTCCCGTGTTTAACTCTTCCCCGCCACCGTCCCGCCGGCGGCCATAGATTC CCGGTGAGCAGAAGCTTTCGAGTCAGAGCCATGAGAGCCGTCGTCCAGCGAGTTGAATCAGCCGGCGTCGAGGTGGACGGGCAGCTGGTGTCGGAGATTG GGCCAGGACTGCTCGTTCTCGTCGGAATCCACGAATCAGACACCGAGGCGGACGCCGATTACATATGCCGGAAGGTTTTGAATATGAGATTGTTCACAAA TGAGGCCAACGGAAGAGGATGGGACCAGAATGTAATGCAGAAGAACTATGGAGTTTTGCTAGTGAGTCAGTTTACACTGTATGGAATTATGAAGGGGAAC AAGCCAGACTTTCATGTAGCAATGCCACCCCAGAAAGCAAAGCCGTTCTACGAATCGTTAGTGGACAAGTTCAGGAAATCTTACAATCCTGACGCCATTA AAGATGGTGTGTTTGGTGCGATGATGAAGGTTAATCTGATAAACGATGGTCCAGTTACGATGCAACTCGACTCGTCTCAACCCTCGAAGGCTGCAAATGG GAATGGAAACGTAGCAGAGCAATCATAA
AA sequence Show only first row Show all	>Lus10005278 pacid=23175320 polypeptide=Lus10005278 locus=Lus10005278.g ID=Lus10005278.BGIv1.0 annot-version=v1.0 MAILPHSPSTFLYISLIILLLLHISSATGAATNRRRPRQLSVNYYARTCPHLEQLVGSVTSQQFKVSPVSGAATIRLFFHDCFVQGCDGSILMSTKPGSR ELAEKEAEDNKDLRAEGYDTVFKAKSLVETKCPGAVSCSDILAIAARDYVHLTGGPYYQVKKGRFDGKTSKATTVPGNIPRPNSTVDALFTLFRTKGLSL QDMVVLSGAHTIGFAHCKQFVSRLYDYKGTKNPDPTLDPRLLKELRMSCPRVGSNDGVVVPFDVTTPFMFDHAYYLNLEGRLGLLGSDQGLWMDPRTKGV VQEMGRDRGKFLGMFGLAMEKMGDIGVKRGRRHEAIKGNDLLIGKNEATCYRLQSRPNFLKQGPYNSKHFPDKVKMHRSLSSTLPCLTLPRHRPAGGHRF PVSRSFRVRAMRAVVQRVESAGVEVDGQLVSEIGPGLLVLVGIHESDTEADADYICRKVLNMRLFTNEANGRGWDQNVMQKNYGVLLVSQFTLYGIMKGN KPDFHVAMPPQKAKPFYESLVDKFRKSYNPDAIKDGVFGAMMKVNLINDGPVTMQLDSSQPSKAANGNGNVAEQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	0	1
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10026101 [exp]	2.4	0.9269
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	3.3	0.9514
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	4.9	0.9253
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	6.9	0.9241
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	7.1	0.9048
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	7.4	0.9250
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	7.6	0.9354
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	7.7	0.9079
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	11.0	0.9144
AT1G50660			unknown protein		Lus10021521 [exp]	12.5	0.9137

Compare expression of checked genes

Lus10005278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.