Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45950 377 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 239 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 236 / 3e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 232 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45960 230 / 2e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 224 / 1e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 221 / 3e-69 SGNH hydrolase-type esterase superfamily protein (.1) AT2G40250 221 / 4e-69 SGNH hydrolase-type esterase superfamily protein (.1) AT3G16370 219 / 1e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 216 / 2e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013956 [exp] 627 / 0 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 243 / 5e-78 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015162 [exp] 239 / 4e-76 AT2G04570 482 / 5e-172 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10031520 [exp] 239 / 2e-75 AT2G04570 473 / 3e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 235 / 8e-75 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 234 / 5e-74 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 233 / 1e-73 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 226 / 5e-71 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 225 / 1e-70 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G051900 [exp] 471 / 2e-167 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 247 / 4e-79 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 238 / 6e-76 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 233 / 5e-74 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 226 / 1e-70 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 224 / 1e-70 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 223 / 1e-69 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 219 / 3e-68 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 218 / 5e-68 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 218 / 7e-68 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10005279 pacid=23175307 polypeptide=Lus10005279 locus=Lus10005279.g ID=Lus10005279.BGIv1.0 annot-version=v1.0 ATGTCGTCTAAGGTTGCAATGTCTGCAGGCTTGCCCATTGTGGCGGTGGTGGTGGTGCTGCTGATGTCATCGTCGTCGGCAGCGGAGATTAGTCCGATTA AGATGCTGGCTGACAAGTACAACGTAACGAGTGTGTTGGTGTTTGGGGACTCGAGTGTCGACCCTGGAAACAACAACCAGTTGCATACTCCGATGAAGGG CAACTTCCCTCCTTATGGCAAAGATTTCTTCCTCGGCCGCCCCACCGGCCGGTTCAGCAACGGCAGGCTCGCCACCGACTTCATTGCCGAGGCAATCGGA TATACAAAGATCATCCCAGCATTTCTGGACCCACGTCTCAAGCCAGCTGACATCCTCCACGGCGTCAGCTTCGCATCGGCCGCTTCCGGCTATGATGAAC TCACCGCCAATTTCTCGAAAGTGCTGTCAATGCGGAAACAGCTGGACTATTTGATGCACTACAAGCTCCACCTCAGCAGGCTCGTCGGACCCGCCAAGGC CGACCAGATAGTAAAGAACGCCGTGTTCGTTCTCAGCATGGGAACCAACGACTTCCTCCAGAACTACTTCCTGGAGGCCGACCGTGCTAAGCAGTTCACC GTTGTCCAGTATCAGGAATTCTTGTCCACTCAGATGCTCCACAATGTCAAGGAAATGCACAGGCTGGGACTTCGGAGATTGGTCGTGGTGGGGGTCCCAC CGCTCGGATGTATGCCACTTGTCAAAACGCTCAACGGCCAGGATGAAACCTGCGTGGAATCCTATAACCACGTGTCCGCCACGTTCAATGCTAAAGTCAA GTCGAATCTCGCACTTCTCCGTCGGACGCTGGGAATCAAAGATGCTTACGTGGACTGCTTCGGAGTCATTCAAGCCGCCGTCAAAGACCCAAAATCCTAC GGATTGGTGGAGGTGAAGAAGGGCTGCTGTGGGACCGGGACCATCGAATACGGTGACACATGTAAGGGGCTGGCCACGTGTAAGGACGCGTCGAAGTATG CGTTCTGGGATGCGGTTCATCCGAGCCAGAGGATGTACGAGTTGATTGCTGATGAGGCGATTCAGTCCATCTCTGTATCAATGTTCTCATAA
AA sequence Show only first row Show all	>Lus10005279 pacid=23175307 polypeptide=Lus10005279 locus=Lus10005279.g ID=Lus10005279.BGIv1.0 annot-version=v1.0 MSSKVAMSAGLPIVAVVVVLLMSSSSAAEISPIKMLADKYNVTSVLVFGDSSVDPGNNNQLHTPMKGNFPPYGKDFFLGRPTGRFSNGRLATDFIAEAIG YTKIIPAFLDPRLKPADILHGVSFASAASGYDELTANFSKVLSMRKQLDYLMHYKLHLSRLVGPAKADQIVKNAVFVLSMGTNDFLQNYFLEADRAKQFT VVQYQEFLSTQMLHNVKEMHRLGLRRLVVVGVPPLGCMPLVKTLNGQDETCVESYNHVSATFNAKVKSNLALLRRTLGIKDAYVDCFGVIQAAVKDPKSY GLVEVKKGCCGTGTIEYGDTCKGLATCKDASKYAFWDAVHPSQRMYELIADEAIQSISVSMFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	0	1
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	1.0	0.9644
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	2.0	0.9453
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	2.4	0.9310
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	3.5	0.9273
					Lus10015131 [exp]	4.2	0.9145
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	4.7	0.8978
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	8.7	0.8804
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10018831 [exp]	8.7	0.8732
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	9.7	0.9151
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	12.7	0.9139

Compare expression of checked genes

Lus10005279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.