Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45960 371 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 263 / 4e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 246 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 246 / 3e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G06990 243 / 3e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 236 / 2e-74 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G31540 236 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 231 / 1e-72 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G20120 231 / 6e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30220 228 / 1e-71 GDSL-like Lipase/Acylhydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013957 [exp] 550 / 0 AT5G45960 331 / 4e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029958 [exp] 266 / 2e-86 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 240 / 7e-76 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003717 [exp] 237 / 9e-75 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013956 [exp] 236 / 2e-74 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 236 / 2e-74 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 235 / 5e-74 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003719 [exp] 234 / 1e-73 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10013572 [exp] 229 / 6e-72 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062000 [exp] 416 / 6e-145 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 407 / 2e-141 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 266 / 5e-86 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 258 / 4e-83 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 253 / 3e-81 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 251 / 2e-80 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 247 / 2e-78 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 241 / 4e-76 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 238 / 1e-75 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 228 / 3e-71 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10005280 pacid=23175303 polypeptide=Lus10005280 locus=Lus10005280.g ID=Lus10005280.BGIv1.0 annot-version=v1.0 ATGGAGAGCCACTATGGAGAGAAGAAGAAGAACTACATTTGTTTTCTTCTCCTCTTCATTCTGTTTCTGGACTCTGAGGTCGCCGCTGGAGCTCACGTCG GCGTCAGGCCGGCAAACAGCTCGGTAACGGCGGTGTTGGTGTTTGGAGACTCGACGGTGGACGCCGGGAATAACAACTTTGTGAAGACTCCTTTCAAGGG AAACTTCCCTCCTTATGGCCAGGATTTTGTCGGCGGCCAGCCCACCGGCCGGTTCCGCCACGNNNNNNNNNNNNNNNNNNNNNCCCGGCCGGCTCACCAC CGATTTCATAGGTCAGTAGTGTTGGTTATACGTTCAATTGTTCATATTCATTTAATCACTTTACTTGTGGTCGGATTCGCTTCCTACGTGGGAGTGAAAG AAAACGTGCCGCCCTACCTCGACCCATCGCTCACCATCGAAGACCTCAGGACCGGAGTCACCTTTGCATCGGCCGGCACCGGATTTGATCCCATGACCCC TCAAATCAGCAACGTTATACCAATTGATCAGCAAGTGGTTTACTTCAAGGAGTACAAGAAAAAGCTCGAAGCTGTTATGGGGAAGCAGAGGACCCAAGAA CACATTAGGAGATCGTTGATCGTCATCAGCGCGGCCACCAACGACTTCGTTATCAGTTACTTCGCGCTGCCGGTTCGTCGCAAAAGCTTCACCATATCGG AGTACGAGAGGTTCATCCTGCAAAAATCGATGGACTTCGTCCAAGCATTGATAGATGAAGGGGTAACAAGGGTGCTACTGAGTGCATTAGCTCCAATGGG TTGTTTGCCGGTGGTTATTACGCTCTTCTCAAAGGACCCAATTTTCGATCGCGGATGTCTGGATCAGTACACTCAGGTGGCAATCAATTATAACCGCATG GTTCAAATCGAATTGAACCGGATGAAACCTCGCCTCGATAGTCAAGGAGTCAAGATCTACATATCGGATGTTTATCACACTGTGGATGACATTATCCAAC GGCCACAAGCTAACGGTTACGACAAAGTCAATGCCGGGTGTTGTGGGACCGGGTTATTGGAAGCCGGGTTCTTGTGCAACCCGCATTCGTTGGTGTGCCC TGATGCTTCGAAGTATGTGTTTTGGGATGCGATTCATCCATCGGAGAGAACGTATCACAAAATTTTTAAGGCTATTCGTCCTACCATTGATCTACTCATT AAGGATTGA
AA sequence Show only first row Show all	>Lus10005280 pacid=23175303 polypeptide=Lus10005280 locus=Lus10005280.g ID=Lus10005280.BGIv1.0 annot-version=v1.0 MESHYGEKKKNYICFLLLFILFLDSEVAAGAHVGVRPANSSVTAVLVFGDSTVDAGNNNFVKTPFKGNFPPYGQDFVGGQPTGRFRHXXXXXXXXRPAHH RFHRSVVLVIRSIVHIHLITLLVVGFASYVGVKENVPPYLDPSLTIEDLRTGVTFASAGTGFDPMTPQISNVIPIDQQVVYFKEYKKKLEAVMGKQRTQE HIRRSLIVISAATNDFVISYFALPVRRKSFTISEYERFILQKSMDFVQALIDEGVTRVLLSALAPMGCLPVVITLFSKDPIFDRGCLDQYTQVAINYNRM VQIELNRMKPRLDSQGVKIYISDVYHTVDDIIQRPQANGYDKVNAGCCGTGLLEAGFLCNPHSLVCPDASKYVFWDAIHPSERTYHKIFKAIRPTIDLLI KD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10005280 [exp]	0	1
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	3.6	0.6988
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	3.7	0.7559
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	9.8	0.7443
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	14.7	0.7356
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	14.8	0.7363
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	15.5	0.7387
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	19.6	0.7054
AT5G50800		SWEET13, AtSWEE...	Nodulin MtN3 family protein (....		Lus10005935 [exp]	20.4	0.6930
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	24.0	0.6793
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	25.8	0.7107

Compare expression of checked genes

Lus10005280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.