Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33880 183 / 5e-54 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 171 / 6e-50 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT5G17810 94 / 7e-22 HD WOX12 WUSCHEL related homeobox 12 (.1.2) AT3G03660 94 / 1e-21 HD WOX11 WUSCHEL related homeobox 11 (.1.2) AT5G05770 76 / 2e-16 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT1G20700 74 / 6e-15 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT3G11260 72 / 8e-15 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT3G18010 75 / 1e-14 HD WOX1 WUSCHEL related homeobox 1 (.1) AT2G17950 74 / 1e-14 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G28610 72 / 2e-14 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013960 [exp] 548 / 0 AT5G45980 179 / 6e-53 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10028271 [exp] 79 / 1e-16 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10042007 [exp] 78 / 2e-15 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10040219 [exp] 75 / 2e-15 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10018011 [exp] 76 / 1e-14 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10023561 [exp] 73 / 1e-14 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10040447 [exp] 72 / 4e-14 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10024808 [exp] 70 / 3e-13 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10041909 [exp] 69 / 1e-12 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061400 [exp] 308 / 2e-102 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 305 / 6e-101 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.019G040800 [exp] 103 / 3e-25 AT3G03660 221 / 1e-71 WUSCHEL related homeobox 11 (.1.2) Potri.013G066900 [exp] 98 / 3e-23 AT3G03660 233 / 9e-77 WUSCHEL related homeobox 11 (.1.2) Potri.012G047700 [exp] 76 / 8e-15 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.010G192100 [exp] 72 / 8e-15 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.015G039100 [exp] 75 / 1e-14 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.014G025300 [exp] 71 / 7e-14 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.005G252800 [exp] 71 / 8e-14 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.010G111400 [exp] 71 / 2e-13 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10005282 pacid=23175321 polypeptide=Lus10005282 locus=Lus10005282.g ID=Lus10005282.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAAACCGACACTGGCCTAGCTTGTTCAAGTCCAAACCAGCACCTTGTAACCCTCATCATCACCATCCATGGCAGCATGATGTCACTCCTC CTCCACCGACCCACCGTCCCAATTCCTCTTACAATCCTGTTGGGGGGGAGGAGAGGAGTCCGGAGCCGAAACCAAGGTGGAACCCGAAACCCGAGCAGAT CAGGATTCTCGAAGCGATCTTCAACTCGGGGATAGTCAACCCTCCTCGCGACGAGATTCGGAAGATTCGAGTCCAACTTCAGGAGTTCGGCCAGGTAGGG GATGCCAACGTCTTCTACTGGTTCCAGAACCGCAAGTCTAGAAGCAAGCACAAGCTCCGCCACCTCCAACCTTCCAAAACGACGTCGTATCAACCCCCGA ATCCTCCCACAACTACAATTTCCGCTGTTTCTTCGTCGTCATCCTCGTCATCCGACAACTTCAAGCCCTCCCCTCGATCTGCTGGCTCCAAGAGAACACT CTCTTCCCGATCCGAGCAAAACGGGGTTGTTTTGCTCGACCCTTCAACCACCACCACTCATCAGCCTTCATCATGCGACTTCTTCTCTTCTGAGCCGGCG CCGTTTTTCATGTCTGGACAGCACCCGACCGGTTTTTCCTTCTCTGAACCGGTGGTCGGTAATGTGGTCGGACCGTGTACTAGTCTTTTACTCAGCGACA TTCTGAATCTGAACCATTATAGGAAGTTGATGGATCAAGTTGACGAGGACCATGACGGGATTAAGAAATTACAGCTCGACCATCATCATCATCAGATTTG TTACTCCAACGAAACGAACACCAACGGTAACGTTGTGACCACAACATCTCCTATCGTCGGCCTTGCTTGCAACCCTGTCACGGCTCCTTCTTCCTTTCTT AGCCACATTCCAGTTGGTATGGGTAGTACGCCTGGAGATCATCATCAGGAGTCGGAGCAAACGAATTCGTCGAAGACGACGGTGTTCATAAACGACGTGG CGTTCGAGGTTGGAACGGGGCCGTTTAACGTGAGGGAGGCGTTCGGGGATGACATGCTGCTGGTTCACTCGTCGGGGCAGCCGGTTCTGACTGATGACTG GGGAATTACTCTTCAGTCCCTTAACCATGGGGTTTTTTACTATTTAGTACCCTTCCCCTCCACCGCCCACCATGTTAGTCATATTTAA
AA sequence Show only first row Show all	>Lus10005282 pacid=23175321 polypeptide=Lus10005282 locus=Lus10005282.g ID=Lus10005282.BGIv1.0 annot-version=v1.0 MASSNRHWPSLFKSKPAPCNPHHHHPWQHDVTPPPPTHRPNSSYNPVGGEERSPEPKPRWNPKPEQIRILEAIFNSGIVNPPRDEIRKIRVQLQEFGQVG DANVFYWFQNRKSRSKHKLRHLQPSKTTSYQPPNPPTTTISAVSSSSSSSSDNFKPSPRSAGSKRTLSSRSEQNGVVLLDPSTTTTHQPSSCDFFSSEPA PFFMSGQHPTGFSFSEPVVGNVVGPCTSLLLSDILNLNHYRKLMDQVDEDHDGIKKLQLDHHHHQICYSNETNTNGNVVTTTSPIVGLACNPVTAPSSFL SHIPVGMGSTPGDHHQESEQTNSSKTTVFINDVAFEVGTGPFNVREAFGDDMLLVHSSGQPVLTDDWGITLQSLNHGVFYYLVPFPSTAHHVSHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	0	1
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	3.0	0.9918
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	4.5	0.9911
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	5.5	0.9905
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	5.7	0.9884
					Lus10026293 [exp]	6.6	0.9904
					Lus10041871 [exp]	6.9	0.9896
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	7.7	0.9898
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	8.0	0.9793
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	8.8	0.9892
					Lus10021217 [exp]	10.4	0.9872

Compare expression of checked genes

Lus10005282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.