Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24650 207 / 6e-66 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 196 / 2e-61 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032959 [exp] 347 / 1e-120 AT5G24650 295 / 6e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10015593 [exp] 221 / 2e-70 AT5G24650 218 / 3e-70 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032913 [exp] 208 / 6e-66 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G000600 [exp] 278 / 1e-93 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 266 / 2e-88 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10005289 pacid=23175302 polypeptide=Lus10005289 locus=Lus10005289.g ID=Lus10005289.BGIv1.0 annot-version=v1.0 ATGACCCATTTGTCCCTCTATCTCTCACTCTGTACTGCGTATCCTCGCCGGCCCAAGCCTATCTATCCATTCCCTTTCAATCAGTCTCTCTCGCCTGCCT TGGTTTCTGTTAGTATTCTTACCTCCCCCCAGCCGAGTAACATCTTTCACAAAAAAGGGCAAATCTCCAGTGCGATGGGAGACAGCAAGCAGGGCTTCAC GTTGGCCAAAGTAAACTTCAATGAGAATCCTATTCAGTCCCTTCAGCACAAGTACAAGGAACTGGAGACTACCTTCAAAACTTGGGTGTCCCAGCAGTCA ATTCCCGTCGAGGCTGCCATCGTCACGGCTACAGGCGCCATCCAGGGCGCTGCTATCGGCGGCCTCATGGGCACCCTCACCGGCGACATGGCCTCCCCGC TTTCTCCTCCTCCTCAGGCCTCCTTGAACCCTCAGGCCATGGCCTCTTTCAAGCAAGCCCAGGCACTTGCAGGGGGTCCCTTGGCTCAAGCTCGCAACTT TGCTGTTATGACCGGGGCCAATGCTGGTATTGCTTGTGTTATGAAAAGGGTGAGAGGCAAGGAGGATGTCCAGTCCAGTATGGTAGCCGCATTTGGGTCT GGAGCCATGTTTTCGTTGGTGAGTGGGGTGGGTGGCCCAAATCCTGCTGCAAATGCAATCTCTTCTGGATTCTTTTTCGCGGTTGTTCAGGGTGGCCTTT ACCAGTTAGGACAGAAGTTCTCTCAGCCTCCAGCTGAAGAGCACTATGCGAGAACTCGATCCATGCTTAGTAAGCTCGGGCTTCCGAACTATGAGAAGAA TTTTAAGAAGGGCTTGCTGAATGACAATACATTACCATTGCTGACAGACAGTGCACTTAGAGACGTGAAAATCCCTCCTGGACCAAGGCTGCTCATTCTT GACCATATTCAGAGGTTCTAA
AA sequence Show only first row Show all	>Lus10005289 pacid=23175302 polypeptide=Lus10005289 locus=Lus10005289.g ID=Lus10005289.BGIv1.0 annot-version=v1.0 MTHLSLYLSLCTAYPRRPKPIYPFPFNQSLSPALVSVSILTSPQPSNIFHKKGQISSAMGDSKQGFTLAKVNFNENPIQSLQHKYKELETTFKTWVSQQS IPVEAAIVTATGAIQGAAIGGLMGTLTGDMASPLSPPPQASLNPQAMASFKQAQALAGGPLAQARNFAVMTGANAGIACVMKRVRGKEDVQSSMVAAFGS GAMFSLVSGVGGPNPAANAISSGFFFAVVQGGLYQLGQKFSQPPAEEHYARTRSMLSKLGLPNYEKNFKKGLLNDNTLPLLTDSALRDVKIPPGPRLLIL DHIQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24650			Mitochondrial import inner mem...		Lus10005289 [exp]	0	1
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	3.3	0.8273
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	11.4	0.7890
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	13.8	0.7279
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	17.3	0.7737
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	19.6	0.8092
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	21.1	0.8111
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	21.4	0.7698
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10021087 [exp]	23.7	0.7937
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	28.8	0.8146
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	37.0	0.7619

Compare expression of checked genes

Lus10005289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.