Plant FIBer expression Database

Lus10005290 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09520 81 / 1e-18 unknown protein
AT3G17460 45 / 6e-06 PHD finger family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G206600
[exp]
65 / 8e-13 AT3G17460 59 / 1e-10 PHD finger family protein (.1)
Potri.010G002200
[exp]
61 / 3e-11 AT1G09520 71 / 1e-14 unknown protein
PFAM info
Representative CDS sequence
>Lus10005290 pacid=23175304 polypeptide=Lus10005290 locus=Lus10005290.g ID=Lus10005290.BGIv1.0 annot-version=v1.0
ATGAATCCTCCAAAACCCTACCCAATCTCATCCCCCGCCGTCAACACCCGGAATCCCAAATCGGACGCTGACTGCGACAACTGCTTCTCCAGGGGGGCCT
GGCTCCTCCACCATGTTCGCCTCCGCCGTACGTTCCGCCGCGTCTGCACCTCCTGCGTCCTCCTCCTCCACCCATCTTCCTTCTGTCCTATCTGCTTCTC
CATCCACGGATCAGGCCCCCCAGATCAAGAACCTGCTGGCGAGCTCCTTCGCTGCTCCAACTGCTCCTCCCTCACCCACTCCCGATGCGCTCCTTCTCAT
CCTCTGCCGCCCTTCCCCTACCTCTGCCCTCCTTGCTCTGACCCCACCTTCTCCTTCTTCTCCCCTTCCCCTGGACCCGGTGTCTCCATCGATGCTAAGA
TGGCTACGGCACTTCTGTGCGCCGCCAAGATAGCTGCTTGTTCAATGGCAGAGGCGGTCAAGTCGGCAGAAGACGATGCCGACCGCTGGGTCAAAGAAGC
AGCTGTCTGCAGGAAAAGTGTGAAAGAGGCTCTGGACCGGATGTCAGTGGTGGCGGCGGCCAGGATGAAAGCGGCATCGGGCAGTTTAGGGAAGCCCTTG
AAAAATCAAACCAAAGAAGAGTGA
AA sequence
>Lus10005290 pacid=23175304 polypeptide=Lus10005290 locus=Lus10005290.g ID=Lus10005290.BGIv1.0 annot-version=v1.0
MNPPKPYPISSPAVNTRNPKSDADCDNCFSRGAWLLHHVRLRRTFRRVCTSCVLLLHPSSFCPICFSIHGSGPPDQEPAGELLRCSNCSSLTHSRCAPSH
PLPPFPYLCPPCSDPTFSFFSPSPGPGVSIDAKMATALLCAAKIAACSMAEAVKSAEDDADRWVKEAAVCRKSVKEALDRMSVVAAARMKAASGSLGKPL
KNQTKEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09520 unknown protein Lus10005290
[exp]
0 1
AT3G06200 P-loop containing nucleoside t... Lus10021947
[exp]
4.5 0.8448
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Lus10005066
[exp]
4.9 0.8576
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Lus10027839
[exp]
7.1 0.8530
AT2G39020 Acyl-CoA N-acyltransferases (N... Lus10023533
[exp]
12.2 0.8531
AT2G33845 Nucleic acid-binding, OB-fold-... Lus10039889
[exp]
12.7 0.8055
AT4G00390 GeBP DNA-binding storekeeper protei... Lus10018859
[exp]
15.2 0.8220
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Lus10030894
[exp]
17.7 0.8277
AT3G59840 unknown protein Lus10030936
[exp]
21.0 0.8315
AT2G15000 unknown protein Lus10025365
[exp]
22.2 0.8096
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Lus10017890
[exp]
22.7 0.7789

Lus10005290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.