Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59990 387 / 2e-134 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G44180 370 / 1e-127 MAP2A methionine aminopeptidase 2A (.1) AT3G51800 65 / 8e-12 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000403 [exp] 388 / 5e-135 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10010592 [exp] 333 / 2e-114 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10027121 [exp] 252 / 1e-82 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10002851 [exp] 65 / 1e-11 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10003379 [exp] 64 / 3e-11 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 62 / 1e-10 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 61 / 2e-10 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 58 / 4e-09 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133200 [exp] 400 / 9e-140 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.004G084800 [exp] 400 / 2e-139 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.006G102200 [exp] 68 / 1e-12 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 66 / 3e-12 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10005292 pacid=23175330 polypeptide=Lus10005292 locus=Lus10005292.g ID=Lus10005292.BGIv1.0 annot-version=v1.0 ATGGCAGATGAAGTTTTGAAGAAGGAGGTCGCTATTGAAGATAATGGCGCTGAGGAAAAGAATGGGACTTTAGAGCCTTCAGTGAGTAATGACCACGACG AGTCGTCTGCTGGGCGGAATGATGCTGATGAGAAGAAAGACGCTTCAAAGAAGAAAAAGAAGAAAAATAAAAGCAAGAAGAAGGAAGCACCCCAGCAGAC TGATCCACCCACTATTCCTGTTGCCGAGCTCTTCCCATCTGCTGAATTTCCGGAGGGTGAAATTCAACAATACAAAGATGATAACTTGTGGCGTGCGACT TCTGAGGAGAAGAGAGAGTTGGAGCGTCTTGAAAAACCATTATATAACTCAGTTCGACAAGCTGCAGAAGTTCATCGACAGGTTCGCCAATATATCAGAA GCATTTTGAAGCCTGGAATGTTAATGACCGACCTTTGTGAGACATTGGAAAACACAGTTCGTAAGCTAATATCAGAAAACGGTCTCCATGCTGGAATTGC GTTTCCAACAGGATGCTCGCTGAACTGGGTTGCTGCTCACTGGACGCCCAACTCTGGTGACAAGACAGTACTTCAGTATGATGATGTAATGAAGCTAGAT TTTGGGACCCACATTGATGGATGCATCGTGGACTGTGCATTTACGGTAGCCTTCAATCCTATGTTTGATCCACTGCTTGAAGCTTCACGGGAGGCAACCA ACACGGGTATAAAGGAAGCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATTCAAGAGGTCATGGAATCTTATGAGGTTGAAATAAACGGGAA GGTGTTTCAAGGTAGAGGTTATATTGGTGATCATTGA
AA sequence Show only first row Show all	>Lus10005292 pacid=23175330 polypeptide=Lus10005292 locus=Lus10005292.g ID=Lus10005292.BGIv1.0 annot-version=v1.0 MADEVLKKEVAIEDNGAEEKNGTLEPSVSNDHDESSAGRNDADEKKDASKKKKKKNKSKKKEAPQQTDPPTIPVAELFPSAEFPEGEIQQYKDDNLWRAT SEEKRELERLEKPLYNSVRQAAEVHRQVRQYIRSILKPGMLMTDLCETLENTVRKLISENGLHAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLD FGTHIDGCIVDCAFTVAFNPMFDPLLEASREATNTGIKEAGIDVRLCDVGAAIQEVMESYEVEINGKVFQGRGYIGDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10005292 [exp]	0	1
AT5G22040			unknown protein		Lus10008373 [exp]	8.9	0.8972
AT1G11320			unknown protein		Lus10013574 [exp]	9.1	0.9110
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	11.4	0.8958
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	13.3	0.8989
AT4G34270			TIP41-like family protein (.1)		Lus10020231 [exp]	13.4	0.8751
AT3G58470			nucleic acid binding;methyltra...		Lus10000248 [exp]	17.5	0.8938
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	18.3	0.8983
AT5G38720			unknown protein		Lus10023232 [exp]	20.8	0.8761
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	21.0	0.8890
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	26.3	0.8851

Compare expression of checked genes

Lus10005292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.