Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15930 101 / 7e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 101 / 9e-26 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 94 / 3e-23 SLO1 SLOW GROWTH 1 (.1) AT3G11460 93 / 6e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 93 / 7e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40410 91 / 3e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 91 / 6e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 90 / 7e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 90 / 9e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 89 / 2e-21 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010591 [exp] 263 / 6e-87 AT5G66520 346 / 4e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 100 / 1e-25 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 100 / 1e-25 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 96 / 7e-24 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030225 [exp] 94 / 1e-23 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 95 / 2e-23 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000117 [exp] 94 / 2e-23 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027311 [exp] 94 / 3e-23 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039388 [exp] 94 / 3e-23 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471600 [exp] 127 / 2e-35 AT2G20540 329 / 1e-106 mitochondrial editing factor 21 (.1) Potri.016G128900 [exp] 103 / 1e-26 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 103 / 1e-26 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 102 / 2e-26 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 100 / 1e-25 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 97 / 3e-24 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 96 / 9e-24 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 95 / 1e-23 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 94 / 4e-23 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 94 / 5e-23 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005294 pacid=23175324 polypeptide=Lus10005294 locus=Lus10005294.g ID=Lus10005294.BGIv1.0 annot-version=v1.0 ATGCTGGCTCGTGTAGGGAGGTTAGAGGAGGCACAAGAGCTCATCGAGTCGATGCCAGAGCAGGCAAACTCAGTGATATTAAGAGCACTCCTCAGCGGTA GCAGGATGCATAACGACACCGGGAGAGCAAGTTGGGCATTCCGGAAACTGATGGAAGTTGAGCCAGTGTCAGGGGACATGTGTAAGATGGCAGAGCTTAT GTTTGCAAGTGCAGGCAGGCAAAAGGAAGCAACAAAGATTAGGAGGATAATGAATGCAGCCGGAATGGAGAGGACAGCAGGATGCAGTTTCATTGAAGTA GATGGCACTGTCCATCAATTTATTGCTGGAGACATTATGCATAGTCAAACTGAAGAGATTTATAGAATGTGCAGTACCATTAACACAAGTATGGGAAGAA TATGA
AA sequence Show only first row Show all	>Lus10005294 pacid=23175324 polypeptide=Lus10005294 locus=Lus10005294.g ID=Lus10005294.BGIv1.0 annot-version=v1.0 MLARVGRLEEAQELIESMPEQANSVILRALLSGSRMHNDTGRASWAFRKLMEVEPVSGDMCKMAELMFASAGRQKEATKIRRIMNAAGMERTAGCSFIEV DGTVHQFIAGDIMHSQTEEIYRMCSTINTSMGRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	0	1
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	3.9	0.9242
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010591 [exp]	6.0	0.8840
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	6.0	0.8997
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	7.0	0.8766
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	9.2	0.8784
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	15.5	0.8598
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	18.6	0.8856
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10009290 [exp]	18.8	0.7996
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	20.1	0.8751
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	20.8	0.8276

Compare expression of checked genes

Lus10005294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.