Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33810 186 / 8e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005295 [exp] 270 / 1e-94 AT1G33810 195 / 2e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G076400 [exp] 174 / 9e-57 AT1G33810 156 / 9e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005296 pacid=23168814 polypeptide=Lus10005296 locus=Lus10005296.g ID=Lus10005296.BGIv1.0 annot-version=v1.0 ATGGCAAAGGGTAAGAAAGAGCTGCTCTCAAACGCGCCGTGGAGAGGAGACGACAGCGATGGCGAGAAATTCAAAGACGCCAAGCTCAAAGTCACCAAAC AGCCTGGTTCCGATGCCAAAATGCACATTCCTGGCAAGAAGAAGAACCGCCCTTCCGACTACGATGAAGACAACTCACTCGAGATTGACCCGGAGCTCCG TTACAGCTTCCACCGCAATTATCAGTTCATTCAAAGAGTATTTAGCATTGACACTATAGTGAAGCCTCTTCCACCTGCCATGGCTTACAATGTTTCTCGC AACTTGAGCTTCTTCACTCGCATCTTCACTCAGTTCTTTGGAGATTTAGGTTCGGATTACTTTCAACAACCAGTTTTAGACCCTGAAGGTATCGCAAACG CCCAGAAGTCACTTGGGTTAGGACAAGAAGAGAAATCCCGTAACGTCCGCTAA
AA sequence Show only first row Show all	>Lus10005296 pacid=23168814 polypeptide=Lus10005296 locus=Lus10005296.g ID=Lus10005296.BGIv1.0 annot-version=v1.0 MAKGKKELLSNAPWRGDDSDGEKFKDAKLKVTKQPGSDAKMHIPGKKKNRPSDYDEDNSLEIDPELRYSFHRNYQFIQRVFSIDTIVKPLPPAMAYNVSR NLSFFTRIFTQFFGDLGSDYFQQPVLDPEGIANAQKSLGLGQEEKSRNVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33810			unknown protein		Lus10005296 [exp]	0	1
AT1G33810			unknown protein		Lus10005295 [exp]	1.0	0.8424
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10017874 [exp]	5.7	0.6768
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	15.3	0.6615
AT4G27610			unknown protein		Lus10034127 [exp]	15.7	0.5716
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	30.3	0.5962
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	36.8	0.5716
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	37.8	0.6092
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	41.1	0.5884
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	42.3	0.5657
					Lus10040877 [exp]	85.7	0.4818

Compare expression of checked genes

Lus10005296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.