Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09900 532 / 0 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 525 / 0 ATMES14 methyl esterase 14 (.1) AT1G26360 310 / 8e-103 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT1G69240 301 / 1e-99 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT3G29770 289 / 1e-95 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT2G23560 171 / 2e-51 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT5G58310 164 / 1e-48 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT3G10870 164 / 3e-48 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT2G23580 159 / 1e-46 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23610 158 / 2e-46 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003511 [exp] 580 / 0 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 404 / 2e-142 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10030707 [exp] 312 / 2e-104 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 306 / 5e-102 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 293 / 4e-97 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 287 / 5e-91 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10015532 [exp] 173 / 4e-52 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10023326 [exp] 164 / 2e-48 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10022467 [exp] 161 / 2e-47 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104700 [exp] 575 / 0 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.019G077400 [exp] 568 / 0 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.017G096900 [exp] 319 / 3e-107 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 312 / 1e-104 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 302 / 9e-101 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.009G107500 [exp] 175 / 2e-52 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036800 [exp] 173 / 3e-51 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107200 [exp] 169 / 3e-50 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 167 / 1e-49 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.019G131100 [exp] 160 / 6e-47 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10005298 pacid=23168818 polypeptide=Lus10005298 locus=Lus10005298.g ID=Lus10005298.BGIv1.0 annot-version=v1.0 ATGGGTAATTTAATTTGTATCGCAAAGAAAGATCGAACTAGGAGTAATAACACTGGATCAAGGAGCAGCAGGAGGATGGGTAAGTCGCAAAGGAAGTTAC TGGTTGAGGAAGAGTTGTTGCACAGACAAGCTCTGTCCATGGCTCTTCACCAGCATCAATTATCTCAGAGATTTGAGGGATCCATGTCAAGAAGGATCGG GTCCACTAGCTCCCGCAGGAAGAATCTGCCTGATGATGTTTTGGCTAATGGGAAACAGGTGCCGGAGAATTTGGAGAATATCAAGATAAAGAAGTTTATT CTTATACACGGAGAAGGGTTTGGGGCGTGGTGTTGGTATAAAACTATTGCTCTGCTGGAGGAAGTAGGACTGATTCCAGTTGCCTTAGATCTAACTGGAT CCGGCATCGATACAACAGATACGAATCATATTACTACGTTGGCCGACTACTCAAAACCCTTGATTGCCTATTTGGAAAATCTCTCTGAAGATGAAAAGGT TATTTTGGTTGGACACAGTACTGGAGGCGCATGCGTTTCTTATGCGTTAGAGCTTTTACCTGAAAAGATATCCAAAGCTATTTTTGTTGGTGCCACCATG GTCTCAGATGGTCAGAGACCCTTTGATGTTTTTGCTCAAGAGCTTGGTTCTGCTGAACGCTTTATGCAGGAATCACAGTTTCTGATTCATGGGAATGGGA AGGACAATCCTCCCACAGGGTTCATGTTTGAAAAGCAATTAATGAAAGGCTTATATTTCAATCAATCTCAAACCAAGGATATTGCTCTAGCCATGGTTTC CATGAGAGTGTCACCCATAGGTCCAATGATGGAGAAGCTGTCACTGACAAAGGAGAAATATGGGACATGTCGTCGATTCTTTGTTCAGACATTAGATGAT CGCGCTCTTTCACCGGATGTTCAAGAGAAACTGGTGAGGGAAAACCCACCAGAAGGAGTGTTCAAGATCAAAGGAAGCGACCATTGCCCTTTCTTCTCCA AGCCACAGTCACTGCACAAGATACTGGTTGAAATTGCTCAAATCGAGTAG
AA sequence Show only first row Show all	>Lus10005298 pacid=23168818 polypeptide=Lus10005298 locus=Lus10005298.g ID=Lus10005298.BGIv1.0 annot-version=v1.0 MGNLICIAKKDRTRSNNTGSRSSRRMGKSQRKLLVEEELLHRQALSMALHQHQLSQRFEGSMSRRIGSTSSRRKNLPDDVLANGKQVPENLENIKIKKFI LIHGEGFGAWCWYKTIALLEEVGLIPVALDLTGSGIDTTDTNHITTLADYSKPLIAYLENLSEDEKVILVGHSTGGACVSYALELLPEKISKAIFVGATM VSDGQRPFDVFAQELGSAERFMQESQFLIHGNGKDNPPTGFMFEKQLMKGLYFNQSQTKDIALAMVSMRVSPIGPMMEKLSLTKEKYGTCRRFFVQTLDD RALSPDVQEKLVRENPPEGVFKIKGSDHCPFFSKPQSLHKILVEIAQIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	0	1
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	1.4	0.9433
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	1.7	0.9432
AT2G31800			Integrin-linked protein kinase...		Lus10027107 [exp]	2.0	0.9367
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	3.9	0.9358
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	4.0	0.9445
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	4.9	0.9334
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	6.5	0.9235
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	7.1	0.9292
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	9.0	0.9140
AT1G75510			Transcription initiation facto...		Lus10033190 [exp]	12.1	0.9058

Compare expression of checked genes

Lus10005298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.