Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33970 279 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT1G33950 221 / 3e-69 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33930 218 / 1e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33960 213 / 1e-65 AIG1 AVRRPT2-INDUCED GENE 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33900 211 / 5e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G26820 207 / 6e-62 ATPP2-A3 phloem protein 2-A3 (.1) AT1G33910 199 / 8e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09940 198 / 3e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33890 192 / 8e-58 Avirulence induced gene (AIG1) family protein (.1) AT1G33830 188 / 2e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005299 [exp] 317 / 3e-105 AT1G33970 339 / 5e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003732 [exp] 236 / 1e-74 AT1G33970 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10028023 [exp] 190 / 7e-58 AT4G09940 181 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026891 [exp] 180 / 1e-54 AT2G26820 156 / 2e-45 phloem protein 2-A3 (.1) Lus10005301 [exp] 174 / 2e-53 AT1G33970 121 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009482 [exp] 159 / 6e-46 AT1G33970 148 / 9e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009485 [exp] 141 / 2e-40 AT1G33970 142 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009484 [exp] 123 / 5e-31 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009483 [exp] 97 / 3e-24 AT1G33970 91 / 3e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104800 [exp] 362 / 8e-124 AT1G33970 314 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.019G077300 [exp] 358 / 3e-122 AT1G33970 345 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.008G224900 [exp] 43 / 0.0004 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.010G014300 [exp] 43 / 0.0005 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10005300 pacid=23168821 polypeptide=Lus10005300 locus=Lus10005300.g ID=Lus10005300.BGIv1.0 annot-version=v1.0 ATGGGAGGATCTTTTATAGAAGATGAATGGGAGTTCACCACACCATCCGTTGGGGCTCGAACAATTATTTTAGTTGGACGTACTGGCAATGGTAAGAGTG CTACTGGTAATAGCATTCTTGGGCGAAAGACCTTCAAGTCAAGGACTAGTTCTTCTGGTGTCACTAGTAGCTGTGAATTGCAGACAACTGTTCTGGAAGA TGGACAGATTGTCAATGTCATTGACACTCCTGGGCTTTTCGATTTTTCCATTGGATCTGATTTTGTTGGCAAAGAAATTGTTAAATGCATCAATATGGCC AAAAACGGTATCCATGCAGTGCTCCTTGTTTTCTCTGTGAGGAGTCGCTTTTCGGAAGAAGAAGAAGCTGCAATTCATAGCTTACAATCTTTGTTTGGGA GAAAGATAGTTGAGTACATGATTGTAGTATTCACTGGTGGAGATGAATTCGAGGACAATGACGAAACCTTAGATGATTATTTGGGTCGTGATTGTCCCCA GCCTTTGAAGGAAATACTGCAACTGTGTAACAATCGGATGGTGCTATTTGATAACAAGACTAAAGATGAGAAAAAGAGAGTTGAACAGGTTCAGCAGCTT ATGACACTCACGAACAGCATCATAGCGCAGAATGGTGGTAAGCCATACACAGATGACATCTTTATCGAGATGCAGGAGATGATCCTTCGTGACAAACAAG ATGAGGTTAACTCCATGAAGGGTGCCTCAAATCAGCAATTGAATAATCTCAAGGAGGAAATGAACAAATCATATGAAAAACAGCTTAAACGCATTACTGA AGTGGTACTTGTCCCAACTCTTCCCCTCCTTGTTTGTAGTTCTCTATTTTTCTATGTATTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNGCAAAAATATATCCAATTTCAATTGAGCAAATTCTTTAA
AA sequence Show only first row Show all	>Lus10005300 pacid=23168821 polypeptide=Lus10005300 locus=Lus10005300.g ID=Lus10005300.BGIv1.0 annot-version=v1.0 MGGSFIEDEWEFTTPSVGARTIILVGRTGNGKSATGNSILGRKTFKSRTSSSGVTSSCELQTTVLEDGQIVNVIDTPGLFDFSIGSDFVGKEIVKCINMA KNGIHAVLLVFSVRSRFSEEEEAAIHSLQSLFGRKIVEYMIVVFTGGDEFEDNDETLDDYLGRDCPQPLKEILQLCNNRMVLFDNKTKDEKKRVEQVQQL MTLTNSIIAQNGGKPYTDDIFIEMQEMILRDKQDEVNSMKGASNQQLNNLKEEMNKSYEKQLKRITEVVLVPTLPLLVCSSLFFYVLFXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XAKIYPISIEQIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33970			P-loop containing nucleoside t...		Lus10005300 [exp]	0	1
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	2.0	0.8959
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	3.7	0.8908
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	8.9	0.8627
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	9.9	0.8591
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	10.8	0.8877
AT1G33970			P-loop containing nucleoside t...		Lus10005301 [exp]	11.4	0.7753
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	11.5	0.8829
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	12.2	0.8322
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	17.2	0.8507
AT1G04555			unknown protein		Lus10023715 [exp]	18.3	0.8692

Compare expression of checked genes

Lus10005300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.