Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09960 303 / 9e-105 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 260 / 3e-87 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 259 / 4e-87 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 256 / 5e-86 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G22950 149 / 3e-44 MADS AGL19 AGAMOUS-like 19 (.1) AT5G62165 144 / 2e-42 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G45650 144 / 7e-42 MADS AGL6 AGAMOUS-like 6 (.1) AT2G45660 142 / 7e-42 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT3G57230 142 / 2e-41 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G03710 137 / 4e-40 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008264 [exp] 415 / 6e-148 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 298 / 1e-101 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10004638 [exp] 139 / 2e-40 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 140 / 3e-40 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10034663 [exp] 139 / 1e-39 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10015765 [exp] 137 / 2e-39 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026678 [exp] 136 / 3e-39 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10031665 [exp] 133 / 6e-39 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10037040 [exp] 136 / 1e-38 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104900 [exp] 333 / 2e-116 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 274 / 2e-93 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 258 / 9e-87 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 257 / 3e-86 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G112400 [exp] 150 / 7e-45 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.002G151700 [exp] 147 / 3e-43 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.015G134800 [exp] 147 / 4e-43 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 145 / 2e-42 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.003G119700 [exp] 144 / 2e-42 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.014G074100 [exp] 144 / 5e-42 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10005302 pacid=23168817 polypeptide=Lus10005302 locus=Lus10005302.g ID=Lus10005302.BGIv1.0 annot-version=v1.0 ATGGATCTCTCCTACTCAATTCCTCAGGAACAAGAAGTGGCAGAAGATCAAGAGGAGGTCATAGTCAACAACAACAGCAGCAGCAGCAGCATGGGGAGGG GAAAGATCGAGATCAAGAGGATCGAAAACACCACGAACCGACAGGTGACATTCTGCAAGCGAAGGAACGGACTTTTGAAGAAAGCCTATGAGCTTTCCGT GCTCTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCACCCGCGGCCGCCTCTACGAGTACTCCAACAACAACATCAAGGCCACCATAGAGAAATACAAG AAGGCATGTTCTGACAGTACCCACACTCCCTCCGTTACTGAAATCAACGCCCAGTATTATCAGCAGGAGTCAGCTAAGCTGCGACAACAGATCCAAATGC TGCAGAATTCCAACAGGCACCTCATGGGGGAATCTTTGAGCTCACTCTCTATAAAGGAGCTGAAGCAGCTGGAGAACAGACTTGACCGAGGAGTCAGCAG AATCAGGGCCAAGAAGCATGAGCTTCTGCTAGCTGAAATCGAATATATGCAGAAAAGGGAGATTGAGCTGGAGAATGAAAGTGTGTGTCTTCGTACCAAG ATAGCGGAGGTGGAGAGGGTGAATGAGGAAGCGAACATGGTGAGTGGAGCGGAGCTGAATGCAATCCACGCACTGGCTGCGTCTCGCAACTTCTTTGCTC CAAATGAAATGATGGATCATCCTCCTCCGACGTCGGCGAAAGAACATGACGCATCCCCCCCCCCCGCCGTCGGCGACAAGCACCCCTTTCTCTCCCGGCA GTAG
AA sequence Show only first row Show all	>Lus10005302 pacid=23168817 polypeptide=Lus10005302 locus=Lus10005302.g ID=Lus10005302.BGIv1.0 annot-version=v1.0 MDLSYSIPQEQEVAEDQEEVIVNNNSSSSSMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSNNNIKATIEKYK KACSDSTHTPSVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGESLSSLSIKELKQLENRLDRGVSRIRAKKHELLLAEIEYMQKREIELENESVCLRTK IAEVERVNEEANMVSGAELNAIHALAASRNFFAPNEMMDHPPPTSAKEHDASPPPAVGDKHPFLSRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10005302 [exp]	0	1
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10020985 [exp]	11.3	0.9825
AT3G22490			Seed maturation protein (.1)		Lus10019001 [exp]	15.6	0.8746
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10002187 [exp]	17.5	0.9758
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	22.0	0.9606
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016459 [exp]	24.2	0.9406
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	26.7	0.9604
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	29.5	0.9599
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	32.9	0.9587
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030490 [exp]	32.9	0.9568
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	35.4	0.9585

Compare expression of checked genes

Lus10005302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.