Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30290 1003 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 261 / 8e-77 RPF2 rna processing factor 2 (.1) AT3G53700 250 / 7e-72 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 244 / 9e-71 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 246 / 2e-70 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 241 / 7e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 238 / 3e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 232 / 3e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 231 / 7e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 231 / 1e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010585 [exp] 605 / 0 AT1G30290 481 / 8e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 244 / 2e-70 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 241 / 2e-69 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 236 / 4e-66 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 233 / 7e-66 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10006373 [exp] 233 / 2e-65 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 233 / 2e-65 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029737 [exp] 230 / 5e-65 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 229 / 3e-64 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082300 [exp] 1053 / 0 AT1G30290 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 262 / 1e-76 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 258 / 4e-75 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 247 / 7e-71 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 244 / 7e-71 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G217600 [exp] 246 / 3e-70 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 239 / 2e-69 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G234500 [exp] 242 / 6e-69 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 238 / 6e-69 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 241 / 1e-68 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005303 pacid=23175191 polypeptide=Lus10005303 locus=Lus10005303.g ID=Lus10005303.BGIv1.0 annot-version=v1.0 ATGAGGAAAGCCGTCGCCACTGGCAGACCGATGGGATGTCAATATGCCCACCATGTGTTTGATTGTTTGTTCTCTTCTCGGTCTTCAGGAAACCCTTCTC CTTGCTTTAGTTCTAGTGACAATTACAAGGGTCCAGCTGTCAAAATTCGTGATTTTGATGATGGTAATGGCGATTCCAACAGCTGCAGGCAAATGAGGCG TGCAGAATTTGCCTGCGAGAATTTTGAATCTGATGGATTTGATGATGCTGATGAATCAGAGGTTGATGATGGTGGAGGAGATGGTAGTTGCCTCAGCGAT GATGATAAAAGTTTTACAGCTTTAGATTCTTTCAATAGGAATCGTGGTGGGCAAAAGGAAGAAGAACACACCATGAAAGTCGAGTTAGGGGAACACGAAC TTCGGCACCCTTTGGTGAGGGAGGTCTGTAGGCTGATTGATCGAAGATCAGCTTGGAATCCCAAGATGGAAGGGGAATTGAGAAACTTACTTAGGAGCCT CAAGCCTCGGCTAGTTTGTGCTGTTTTGCGATCTCAAGCAGATGAAAGACTTGCTTTAAGTTTCTTCTATTGGGCTGACCGACAGTGGAGGTATAGACAC CACCCGATTGTTTATTATGTGTTGCTTGAGACTCTGAGTAAAACTAAACTATGTCAAGGTGCCAGGAGGATTATTGTGCTCATGGCACGCAGGGGTATTA AACGGCAGCCTGAAGCTTTTAGTTATTTAATGATTTCATATAGTCGGGCTGGTAGATTGAGGAATGCATTGCAGGTTTTGACAATGATGCAGAAAGCGGG TATTGACCCTAATCTCTTAATATGTAACACCACTATCCATGTTCTGGTATTGGCAAATAGATTGGTAAAGGCATTGAGGTTTTTGGACAGGATGCAGGTC GTTGGAATCATCCCCAACGTTGTAACTTATAACACTTTGATCAAAGGATACTGTGATCTTCACCGAGTCGAAGATGCTATGGAGTTGATTACTGAAATGC CATCCAAAGGATGCCATCCTGACAAAGTTAGTTACTATACTATCTTGACCTATCTTTGCAAGGAGAAGAGGATCAATGAAGTGAAGAACTTATTGGAGAC TATGGTTAAGGAAAGTAAGTTGCTTCCAGATCAGGTTACTTATAATATTCTGATTCAAGTGCTTTCCAAGCATCAGCATTCAGATGAGGCACTTGCATTT GTGAAAGAAGCAGAGGAAAGAGGATATCAGGTTGATAAGGTTGAATACAGTGCAGTAGTTGACTCCTTCTGTAAGCAGGGTAAGATGGACCAGGCAAAAG AAATTGTGAGTGAAATGTTCACTAAAGGTTGCATTCCTGATGTAGTAACATATACTGCTGTAGTTAATGGACTTTGTCAAATTGGGGAAGTCGACCAAGC CAAAAGGATGCTTCAGCAAATGTACAAACATGGCTGCAAGCCCAACACTGTGTCATATACAGCTCTGTTGAACGGGCTTTGTCGAAACGGGAACTCCTCT GAGGCTAGGGAAATGATGAACACAAGTGAGGAAGAATGGTGGACTCCGAATGCCATCACATATAGTGTTGTAATGCATGGATTACGGAGGGAGGGAAAAT TGGCTGAAGCTTGTGATGTGGTGAGAGAGATGGTTGGGAAATCATTTTTCCCTACTCCTGTTGAGATTAATCTATTAATCCAGTCACTTAACCGAGAAGG TAAAGCAGACGTTGCTAAGAAGTTCATGGAGGAGTGTCTACAAGATGGTTGTGCTGTGAATACAGTGAACTTTACTAGTGTTATTCATGGTTTTTGTCAG AATGATAACTTAGATGCAGCTTTGTCATTGCTTGACGACATGTACCTTAGCAACAAGCATCCTGATGCTGTTACCTACACCACACTGATTGACGCACTAG GTAAAAAGGGTCGAATAGATGAAGCTACTGAGATTGCTATGAAGATGCTCAAGAAGGGTGTAGATCCTACACCCGTGACATTTAGAACGGTGATCCACCG GTACTGCGAAATGGGTAGAGTGGAAGATCTGTTGAAGTTGTTGGAAAAAATGCTTTCACGACAGAAGTGCAAAACAGCATATAATCAAGTTATTGAGAAG CTGAGTAGGTTTGGAAACCCTGAGAAAGCTGATAAAATATTGGGTAATATCTTGAGAACCGCCTCCAGAGATGATGCCAATACATGCCATGTGGTAATGG AGAGTTATCTGAAGAAAGGGGTGCCTTTAGCTGCATATAAAGTTGCTTGTCGTATGTTTAACCGCAACATGATCCCTGACATAAAGTTGTGTGAGAGGGT GGGGAAGAAACTGAAATCACAAGGAAACTCAAAGGAGGCTGGTAATCTTATATTACGTTTTGTTGAGCGTGGCAGTGTTTCACCTGAACATTACCAGACG TTGATAACCTAG
AA sequence Show only first row Show all	>Lus10005303 pacid=23175191 polypeptide=Lus10005303 locus=Lus10005303.g ID=Lus10005303.BGIv1.0 annot-version=v1.0 MRKAVATGRPMGCQYAHHVFDCLFSSRSSGNPSPCFSSSDNYKGPAVKIRDFDDGNGDSNSCRQMRRAEFACENFESDGFDDADESEVDDGGGDGSCLSD DDKSFTALDSFNRNRGGQKEEEHTMKVELGEHELRHPLVREVCRLIDRRSAWNPKMEGELRNLLRSLKPRLVCAVLRSQADERLALSFFYWADRQWRYRH HPIVYYVLLETLSKTKLCQGARRIIVLMARRGIKRQPEAFSYLMISYSRAGRLRNALQVLTMMQKAGIDPNLLICNTTIHVLVLANRLVKALRFLDRMQV VGIIPNVVTYNTLIKGYCDLHRVEDAMELITEMPSKGCHPDKVSYYTILTYLCKEKRINEVKNLLETMVKESKLLPDQVTYNILIQVLSKHQHSDEALAF VKEAEERGYQVDKVEYSAVVDSFCKQGKMDQAKEIVSEMFTKGCIPDVVTYTAVVNGLCQIGEVDQAKRMLQQMYKHGCKPNTVSYTALLNGLCRNGNSS EAREMMNTSEEEWWTPNAITYSVVMHGLRREGKLAEACDVVREMVGKSFFPTPVEINLLIQSLNREGKADVAKKFMEECLQDGCAVNTVNFTSVIHGFCQ NDNLDAALSLLDDMYLSNKHPDAVTYTTLIDALGKKGRIDEATEIAMKMLKKGVDPTPVTFRTVIHRYCEMGRVEDLLKLLEKMLSRQKCKTAYNQVIEK LSRFGNPEKADKILGNILRTASRDDANTCHVVMESYLKKGVPLAAYKVACRMFNRNMIPDIKLCERVGKKLKSQGNSKEAGNLILRFVERGSVSPEHYQT LIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10005303 [exp]	0	1
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	10.4	0.8295
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10023399 [exp]	23.3	0.8212
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	24.2	0.8085
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	27.6	0.8185
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	30.8	0.8167
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	46.5	0.7853
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	62.9	0.7823
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	70.9	0.7837
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008800 [exp]	71.7	0.7753
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	71.9	0.7833

Compare expression of checked genes

Lus10005303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.