Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10460 426 / 5e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G099100 [exp] 483 / 7e-174 AT5G10460 444 / 2e-158 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005305 pacid=23175192 polypeptide=Lus10005305 locus=Lus10005305.g ID=Lus10005305.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCTTCCTCCATTAAACCTGGCGGTGACGGCCAGCTCTTCCAGGTCATCCATGGCCTCCAACACCTTGCTGAAACGTGTCACTTCAAGGCAT GGTTCTTGGATCAATTTGGGGTCCTTCATGATGGAAAACAGCCTTACCCTGGTGCAATTGCTACTTTGAAAAAATTGGCAAGGACTGGTTCAAAAATGGT AATAATAAGTAATTCCTCACGGCGTGCTTCAGTCACTATGGACAAAATGAAGACCCTCGGATTCGACACATCTCTATTTGCTGGAGCTATCACTAGTGGA GAGTTAACATATCAACACTTGCATAGGAGAGATGATGGTTGGTTTGCAGCACTAGGAAATTCGTGTATTCATATCACCTGGAGGGACCGTGGAGTCATAT CTCTTGAGGGCCTAGGGTTGCAAGTTGTGGACAATGTGGAAAAGGCTGAATTTGTCTTGATACATGGAACTGAAGCCGTGGGGACTTCTTTTGGAACCGC TTCTTCTGCAACTCTTGAGGAACTTGATAAAATATTGGAGCATTGTGCAGCTCGAAAACTACCAATGGTAGTAGCCAATCCAGACTTTGTGACTGTTGAA GCAAGATCCTTGCGCGTGATGCCTGGTACATTGGCTGCTAAGTATGAGAAGCTTGGAGGAGAAGTGAAGTGGATGGGAAAGCCAGATAAGATAATATACG AGTGGGCGATGGAGATGGCTGGTGTGAGTGCATCAGAATCAATAGGGATTGGAGATTCTCTTCATCATGACATCAGAGGTGCAAATGCAGCTGGGATGCA GTCAATTCTTGTGACCGGCGGGATTCATTCCTCCGAACTTGGTCTGGAAGCGTTGGATGACGTGGCAGATTTACCTTCGGTGAAAGCACTAGCGTCCAAC TATGATGCTTACCCTTCGTATGTAGTACCAGCATTTCGATGGTAG
AA sequence Show only first row Show all	>Lus10005305 pacid=23175192 polypeptide=Lus10005305 locus=Lus10005305.g ID=Lus10005305.BGIv1.0 annot-version=v1.0 MAAPSSIKPGGDGQLFQVIHGLQHLAETCHFKAWFLDQFGVLHDGKQPYPGAIATLKKLARTGSKMVIISNSSRRASVTMDKMKTLGFDTSLFAGAITSG ELTYQHLHRRDDGWFAALGNSCIHITWRDRGVISLEGLGLQVVDNVEKAEFVLIHGTEAVGTSFGTASSATLEELDKILEHCAARKLPMVVANPDFVTVE ARSLRVMPGTLAAKYEKLGGEVKWMGKPDKIIYEWAMEMAGVSASESIGIGDSLHHDIRGANAAGMQSILVTGGIHSSELGLEALDDVADLPSVKALASN YDAYPSYVVPAFRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	0	1
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	2.0	0.8367
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	4.5	0.8180
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	6.9	0.8264
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	8.9	0.7499
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	11.2	0.7882
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	12.5	0.8203
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	16.6	0.7395
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	18.2	0.7132
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	18.9	0.7847
AT1G06050			Protein of unknown function (D...		Lus10008154 [exp]	20.4	0.7281

Compare expression of checked genes

Lus10005305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.