Plant FIBer expression Database

Lus10005306 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59910 876 / 0 Ankyrin repeat family protein (.1)
AT2G44090 854 / 0 Ankyrin repeat family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010581
[exp]
1238 / 0 AT3G59910 885 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G001300
[exp]
999 / 0 AT3G59910 860 / 0.0 Ankyrin repeat family protein (.1)
Potri.007G146500
[exp]
998 / 0 AT3G59910 847 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence
>Lus10005306 pacid=23175190 polypeptide=Lus10005306 locus=Lus10005306.g ID=Lus10005306.BGIv1.0 annot-version=v1.0
ATGGAAAAAGTGATGGCATTTGTTGGAAGTACTCATACACCCATCATGCAGGGGCTTAACCCTGATGAATCATTCTGTGGTGAAATGGAAACAGACGATT
TTGAATCTCCAAACCCAAACAATGAGATTCAATGTTTCACGTCAGAGAGGGGTGAGGGTAGTAATGTGGTTTTCTCAAGAGAAGCACCGCTGGCAAGTAA
AGAGTCAAGAAGGCCAATCCATTATAGTTGTAGCTCAAAAAAGCTTAAATCAAGGATGGTTGGAGCTGAATCTGAAGGAATCAAGGATAGTGTTGGAAAT
TATAAGAAATTTAGCCGACAAGATAGAATGGAGTGGGGCAGATTATTTCAAGGTGCTGTTAGTTCTCATGACTGGGAGCTAGCTGAGAGCCTGATATTAT
TAGCAGATCCGCAAACCCTTAATGACGCTTTATGTATCACACTTGATTCTATTTGGTTCTTAAGCACTGAACAAGAGCTTCATGGAATTACGGGGTTAGT
CAAGAAGATAATAGCTAATGGTGCTGATGACTTTACTAGAGCTGCTTTGAGGACGTCGTTTCTCGCTTCTTGTGTGTCAGCTTGCCAGAGCCGCACAATG
AGTCTTGCTGATACAGTTACTGTCATGGCGCAAAGGCTGCATGAGCGGCTCCAGGACTGCAATGGCGATGAGGTCTTGAAAGCAGAAGCTGGTGCAAAGG
TTCAAAAGTTCACTGAGTGGGCCTTGAAATGTATTGGGTTTCATTCTCGTTGCCAGGGAAGTAGGGGTAGAGTTAATCACAGCTCAGCTGTTGAGATTCA
ATTCCAGTTATCAGCTTTCAAGGTGTTTCTAGATCTTGCTGGCAATCAACTCACAGGAAAGGATTTTACAGAGGCATTTGATGCTGCCTGTTTTCCGCTT
ACTTTGTTCTCGAGTTCATTTGACCCTGGCTGGGCATCTGGGATATCAGCTACTGCAATCCAAGGGTTGTTGGGAATGTTAGTTGAAGGTGGTGCTGACA
ATGTTAACCAGTGTTTTCTTGAAGCTTCCCGTTTTGGAAGTACAGAACTTGTCCGTATCTTACTACAGATTGCGCAGAGGAACAGCTTGGATGTTGATGT
GGATCTGGCCCTTGGGTTTGCTGCCCACTATGGTAAAATTGACACAATGGAGTGCTTGGTGGAAGAGGGGAATGCCATAACTTTTTTAGGACCATTGATG
AGAGCAGCAGAGAGGGGGTGTATGCAGGTTGTGCAGTGGTTTGTAAATAGGGGTTGCCGGGACATGGAGCTTTGCCTTGCTCTTACAGCTGCTACGTCCA
GTTGTCAGGTTGATGTTGCTGCCTACCTCCTACCTCATGTACCTCAGCATGTACTTGCAGCCCTTAGCATTGAAATCTTGAAGGCTGCGGGGGAGAGAAG
TGGTGGTTCTCTTGATGGTGTTGCTTTTCTTCTCCGATCGGACTTCTTAGGAGACCCCTCTGCTACATATGCGGTTGCAGACAGCATTGCTCGGTCTGAT
GATGAGGCAGTAGCCCCAGATCTAAAGTCTTTTCTGCTAGAAAATTGGTCAGAGGCAGCTTTCTCGGATGGATTGAAGCAAGGAGAAGAACATTACATGA
ATTTGTTGAGGATTTTGAATTGGGGGGAATCTCCAATATGCTTGAGTGATCTTCCAGGGCCTTTAAGAATTGCAATAGCTTACATTCCACTGTATAGGGA
ATGCATAGCAACAGGTGGATGTTTGTTCTCACAAAGGCTAAGGGGGCAGCTTGTGGAAGCTGTTAAAAGGCTGGGGGGAGTATCGATGATGGAGGTTAGC
CAGGGTAGAGAGCTGTTAGCCGTATTGCAACGTCATCTTCCTCCTTTCTTGGTTCAATCTATCATAGAGTGA
AA sequence
>Lus10005306 pacid=23175190 polypeptide=Lus10005306 locus=Lus10005306.g ID=Lus10005306.BGIv1.0 annot-version=v1.0
MEKVMAFVGSTHTPIMQGLNPDESFCGEMETDDFESPNPNNEIQCFTSERGEGSNVVFSREAPLASKESRRPIHYSCSSKKLKSRMVGAESEGIKDSVGN
YKKFSRQDRMEWGRLFQGAVSSHDWELAESLILLADPQTLNDALCITLDSIWFLSTEQELHGITGLVKKIIANGADDFTRAALRTSFLASCVSACQSRTM
SLADTVTVMAQRLHERLQDCNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGSRGRVNHSSAVEIQFQLSAFKVFLDLAGNQLTGKDFTEAFDAACFPL
TLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFAAHYGKIDTMECLVEEGNAITFLGPLM
RAAERGCMQVVQWFVNRGCRDMELCLALTAATSSCQVDVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDPSATYAVADSIARSD
DEAVAPDLKSFLLENWSEAAFSDGLKQGEEHYMNLLRILNWGESPICLSDLPGPLRIAIAYIPLYRECIATGGCLFSQRLRGQLVEAVKRLGGVSMMEVS
QGRELLAVLQRHLPPFLVQSIIE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59910 Ankyrin repeat family protein ... Lus10005306
[exp]
0 1
AT1G53510 ATMPK18 ARABIDOPSIS THALIANA MAP KINAS... Lus10005568
[exp]
4.2 0.7306
AT5G06460 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITI... Lus10031862
[exp]
5.6 0.7766
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Lus10039971
[exp]
17.0 0.6632
AT4G00755 F-box family protein (.1.2) Lus10038879
[exp]
18.5 0.6257
AT5G13030 unknown protein Lus10031800
[exp]
19.5 0.6388
AT1G47270 TUB AtTLP6 tubby like protein 6 (.1.2) Lus10033208
[exp]
20.7 0.7027
AT5G53590 SAUR-like auxin-responsive pro... Lus10005781
[exp]
24.5 0.6696
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Lus10015656
[exp]
27.5 0.6537
AT5G22250 AtCAF1b CCR4- associated factor 1b, Po... Lus10016980
[exp]
29.1 0.6825
AT5G57360 LKP1, FKL2, ADO... ZEITLUPE, LOV KELCH PROTEIN 1,... Lus10020003
[exp]
29.7 0.7139

Lus10005306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.