Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43630 112 / 2e-29 unknown protein AT3G59640 76 / 6e-16 glycine-rich protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010586 [exp] 244 / 8e-82 AT2G43630 70 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123800 [exp] 119 / 4e-32 AT2G43630 194 / 2e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005311 pacid=23175197 polypeptide=Lus10005311 locus=Lus10005311.g ID=Lus10005311.BGIv1.0 annot-version=v1.0 ATGGTACTCTGCATTCAAGCAAACCCCTGTCGGACTCATGGCCAGCTTCAGTTGCCCCGATTCCACACACAATTAAAGAAACCGTGTAGTAGTCAAACTC CAAGGACGCTCCTGAGACCTGCTGCTAAATACCTACCTGTGCTGATGCTTCAACATTACAACCTCTCAGCAAAATTCCCGCGAGGTTCCCATGTTTGCTT ACTTGGGAGAAATGAAAACTCTCAAGGAGAAAATGAGGGATCTCCTCTGAAGTCTCTTGAAAATGCTTTTGGAAGTTCCAAAGGTAAATCATTAGAAGAC GTGCTAAGAGAACAGATGAACCAGAATAACGAAGAATTTGATGAAGGAGACATTGGAGACTTTCCGCCAAGAGATGGAAGTGGTGGTGGTGGCGGCGGCG GAGATGGTGGTTTCCAGGGTCCCCAGGATGATGATCTGCCCGGAATGTTGGATGAAACACTTCAAATGGTTTTAGCTAGCCTGGGATTTTTCCTAGCGTA CCGTTACATCCTAGATGGGGAGGGTATGATGCGGATAGTAAAGGACTACTTCAAGTTCCTGTTGACCGGAAAGAAGAGTATTCGTCTAGGGAAAGCATTC GACAGGTGGGAAGAAAGGTGGGAAGGATTGTATCTTAGACTATCCAAGCCATGGAGAAAAAAGACGATAGTGAAGAAGGACGAGTTGTGGTTGGAAAGGC AGATCATGAGGACCAGGACTCGTTTCGATAACCCAGTCAAGTACAAGCGACTGTATCAAGGGAGTGTTCAAGGATCAAATGCTGGTTATTCTGTTAAAGG TCGTCGTTATAAAAATTATGATGATGATGACGATGATGAGGATGATGATGATGATGCTGGCTACATCGACGACTACTATTGA
AA sequence Show only first row Show all	>Lus10005311 pacid=23175197 polypeptide=Lus10005311 locus=Lus10005311.g ID=Lus10005311.BGIv1.0 annot-version=v1.0 MVLCIQANPCRTHGQLQLPRFHTQLKKPCSSQTPRTLLRPAAKYLPVLMLQHYNLSAKFPRGSHVCLLGRNENSQGENEGSPLKSLENAFGSSKGKSLED VLREQMNQNNEEFDEGDIGDFPPRDGSGGGGGGGDGGFQGPQDDDLPGMLDETLQMVLASLGFFLAYRYILDGEGMMRIVKDYFKFLLTGKKSIRLGKAF DRWEERWEGLYLRLSKPWRKKTIVKKDELWLERQIMRTRTRFDNPVKYKRLYQGSVQGSNAGYSVKGRRYKNYDDDDDDEDDDDDAGYIDDYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43630			unknown protein		Lus10005311 [exp]	0	1
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	2.0	0.8757
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	3.0	0.8818
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	6.3	0.8887
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	6.6	0.8891
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	12.2	0.8153
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	15.1	0.8520
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	16.2	0.8399
AT4G28660		PSB28	photosystem II reaction center...		Lus10022867 [exp]	17.7	0.8728
AT2G23820			Metal-dependent phosphohydrola...		Lus10019968 [exp]	20.3	0.8372
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	21.0	0.8656

Compare expression of checked genes

Lus10005311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.