Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13460 185 / 1e-53 IQD11 IQ-domain 11 (.1) AT5G03960 94 / 8e-21 IQD12 IQ-domain 12 (.1) AT2G43680 90 / 6e-19 IQD14 IQ-domain 14 (.1.2.3) AT4G10640 88 / 8e-19 IQD16 IQ-domain 16 (.1) AT3G52290 86 / 4e-18 IQD3 IQ-domain 3 (.1) AT4G00820 86 / 6e-18 IQD17 IQ-domain 17 (.1) AT1G72670 85 / 8e-18 IQD8 IQ-domain 8 (.1) AT2G26180 85 / 9e-18 IQD6 IQ-domain 6 (.1) AT5G03040 84 / 3e-17 IQD2 IQ-domain 2 (.1.2.3) AT3G59690 84 / 3e-17 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039573 [exp] 665 / 0 AT5G13460 243 / 9e-76 IQ-domain 11 (.1) Lus10025593 [exp] 96 / 6e-21 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10027059 [exp] 96 / 6e-21 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10019916 [exp] 92 / 8e-20 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 91 / 8e-20 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 92 / 1e-19 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 88 / 1e-18 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10042027 [exp] 87 / 2e-18 AT5G03960 169 / 5e-48 IQ-domain 12 (.1) Lus10026486 [exp] 86 / 9e-18 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G021000 [exp] 264 / 1e-83 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.006G046000 [exp] 123 / 5e-31 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.016G042700 [exp] 100 / 4e-23 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.013G127200 [exp] 99 / 4e-22 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.019G095700 [exp] 98 / 8e-22 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.006G226600 [exp] 94 / 8e-21 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 91 / 1e-20 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.006G131100 [exp] 91 / 1e-19 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.011G153400 [exp] 89 / 5e-19 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.002G178500 [exp] 89 / 7e-19 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10005315 pacid=23154608 polypeptide=Lus10005315 locus=Lus10005315.g ID=Lus10005315.BGIv1.0 annot-version=v1.0 ATGGGAAGAAAGCCATGGAACTGGTTCAAGAGGCTCTTTTCTTCTGATGCACAGTCCAATTCAGAAAAGAAGGAGAAGAGAAGAAAATGGTTCTTCTTCG ATGTTAAGAACAAGCCACCTTCCATTACAGCAAAATTGGATGATGAGAAAGAGGAGGATCAGGAAAAAGTGACTGTTGAGGTTACTTGGCTATCTCGAAC TGAAAAGCAGCAAACTTCACCTGTGAAACCTCAGGATCATGCTGCTGCCGATTCTGTCGATGGCTTTTCGATTCTTCGGTACCAGAGGGATCTTCAGGAA TTTGCTGCCACTAGGATTCAATCTGCATTTAGGGGCTTCCTTGCAAGGAAGGCTCTGAGGGCACTGAAGGGGATTGTAATGCTTCAAGCAATTATACGTG GGAGAAACGTGAGGCGGCAGGCCATCACAACCCTGAAATGCCTTCAATCCCTCGTGAATATACAGTCACAAGCATCAGCAGCATCATCCAGTTCAAGGAG GAATAGTTTTCCAATGGTTGATTATAATGAGACTAGTTGGCAGTTTGATGAGCCAAACAAGCAGTTGCAGTACCTCAAGGACAAGATAATTAAGTGCAAT TTGATCAGGTGGAACAGCCAGAGAAGATGGGACAGTAGCATCTTGACAAAGGAAGATGCCGATGCTTTGTTTGTGAACAAGAGAGAGGCTGCAATCAAGA GGGAAAGGATCAAAGGTTACTCCTTTTGCCACCGGAGTTCATCGGATTCGGATCGAAGCAAACCGGATGGGAAGTTCAGGCAGTGGCTGGTTGAATGGGA GGATAAACAAATTGACAAAGAAGTTATTGAAGAAGAAGAAGGAGAAGTAGGAGAAGACAGAGCTAAACACCTGAAACTGAGAGGGCTCAGGAGACAATAC CAGAACCACACTGATCAGGAACTAAACTCGCCCCTCACGTCAAGAAGATCATTGCAGCAAAGAAAGCAAGCATCTTGCTCATACATGGCAGCAACCGAGT CTGCTAAAGCCAAAGTGAGATCGCTAAGCTCGCCACGAGTAAGGCCGGGATCAGTTGAGGCTTATAACTCAGATGGTAACTCTCCATACAAGAGCAAGAG GTTGTTTCTTGCAGCAGCATCTAATGGACGTAACAGCAGCAGCTACTATTGTTATAATAACCAGCAGCAAAGGTCTCCAAGCTTGAAGAGCCTTCCTGCT GGTGGTATGAGATCTAATAATAACAGGACACAACTGAAAGATCTCAGCATTGATTCTGGTTGCTCTTTCAAGACTTGGGATCCTCAATGTGCATTTTGA
AA sequence Show only first row Show all	>Lus10005315 pacid=23154608 polypeptide=Lus10005315 locus=Lus10005315.g ID=Lus10005315.BGIv1.0 annot-version=v1.0 MGRKPWNWFKRLFSSDAQSNSEKKEKRRKWFFFDVKNKPPSITAKLDDEKEEDQEKVTVEVTWLSRTEKQQTSPVKPQDHAAADSVDGFSILRYQRDLQE FAATRIQSAFRGFLARKALRALKGIVMLQAIIRGRNVRRQAITTLKCLQSLVNIQSQASAASSSSRRNSFPMVDYNETSWQFDEPNKQLQYLKDKIIKCN LIRWNSQRRWDSSILTKEDADALFVNKREAAIKRERIKGYSFCHRSSSDSDRSKPDGKFRQWLVEWEDKQIDKEVIEEEEGEVGEDRAKHLKLRGLRRQY QNHTDQELNSPLTSRRSLQQRKQASCSYMAATESAKAKVRSLSSPRVRPGSVEAYNSDGNSPYKSKRLFLAAASNGRNSSSYYCYNNQQQRSPSLKSLPA GGMRSNNNRTQLKDLSIDSGCSFKTWDPQCAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	1.4	0.9450
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	1.4	0.9224
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	2.4	0.9162
AT4G35980			unknown protein		Lus10009388 [exp]	3.2	0.8962
AT1G74160			unknown protein		Lus10021148 [exp]	4.0	0.9074
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	4.2	0.8893
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024833 [exp]	4.7	0.8601
					Lus10008292 [exp]	5.3	0.8502
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	5.5	0.8635
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	5.9	0.8833

Compare expression of checked genes

Lus10005315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.