Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63440 498 / 1e-174 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 491 / 4e-171 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT1G75450 336 / 4e-111 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 286 / 9e-92 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 278 / 1e-88 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 263 / 3e-84 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 261 / 3e-82 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT3G47930 45 / 0.0001 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039574 [exp] 687 / 0 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 565 / 0 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10018039 [exp] 407 / 3e-141 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 396 / 3e-136 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 387 / 1e-133 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10042035 [exp] 364 / 1e-123 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 335 / 3e-112 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 335 / 6e-111 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 275 / 2e-87 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203600 [exp] 574 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 565 / 0 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 505 / 2e-177 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 499 / 8e-175 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.002G030500 [exp] 344 / 2e-114 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 342 / 1e-113 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 293 / 1e-94 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 266 / 3e-84 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 233 / 2e-71 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.011G161400 [exp] 45 / 0.0001 AT1G30760 616 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10005317 pacid=23154617 polypeptide=Lus10005317 locus=Lus10005317.g ID=Lus10005317.BGIv1.0 annot-version=v1.0 ATGTTTTTCTTAAGAAGCATATCAATCTTGATCCTGAGCTGCATATTAGTAACAGTAAATCCTTGTTTCCCTACCAAGCATTCTTCTCTGAATACACTCT CCCTAGACGGCCATTTCGCATTTGATCAAGTTCACCATGCAGCTAAAGACTTCGGCAATCGGTATCAGATGTTTCCTTTGGCGGTTCTTCATCCAAAATC TATTGCAGATATTGCGACTACCGTAAAGCATATTTGGCAGATGGGCCCTCGTTCTCAACTTACGGTCGCGGCTAGAGGCCATGGCCACTCACTTCAGGGT CAGGCACAAGCCCACCAGGGAGTTGTTGTAAACATGGAGTCACTGCAGAGTCATAAAATGGAAGTTTTCACAGGGAGCCAACCATATGTAGACGTCTCAG GCGGAGAGTTGTGGATAAATATTCTGACAGAATCTCTGAAATATGGGTTGACCCCAAAATCATGGACAGACTATCTACATTTGACTGTTGGAGGTACTTT ATCCAATGCTGGGGTCAGCGGCCAGGCGTTTCGCCATGGACCTCAAATAAGTAATGTTCATCACCTGGAAGTCATTACAGGAAAAGGAGACGTGCTTAAT TGCTCGGAGAAACAGAATGACGACCTCTTCCACAGTGTTCTCGGCGGACTTGGTCAGTTTGGCATCATAACACGGGCAAGAATATCCCTGGAACCAGCAC CTGATATGGTGAAATGGATCAGAGTTCTCTACTCGGACTTTGCCACATTTACCAGTGACCAGGAGCATTTAATATCTACTAGGAACACATTCGACTATAT TGAAGGATTTGTGATCATCAATAGGACTGGCCTCCTGAATAACTGGAGATCATCCTTCAATCCTCAAGATCCAGTTCATGCTAGCCAATTCAAATCTGAT GGAAAAACTCTCTACTGCCTGGAGTTGGCCAAATACTTCCGCAAAGATGAGAGAGATGCAGCACATGAGGAAGTCATGGACCTGTTGTCTCAGTTACGTT ACATTGCATCCACACTTTTTATATCAGAAGTTCCATATATAGACTTCTTGGATAGGGTTCACATCTCGGAGGTTAAACTACGTGAAGCAAGTAGCTTAGC AAGTTGGGTTAAAGCCAATAAAGAGCACTTCGGAAGGACACAGCACAGGCACAAATTCACAAGTGACAAAACCTTATTGCAATTCATATGCGACAAAGCT CAACAATGGCTATAA
AA sequence Show only first row Show all	>Lus10005317 pacid=23154617 polypeptide=Lus10005317 locus=Lus10005317.g ID=Lus10005317.BGIv1.0 annot-version=v1.0 MFFLRSISILILSCILVTVNPCFPTKHSSLNTLSLDGHFAFDQVHHAAKDFGNRYQMFPLAVLHPKSIADIATTVKHIWQMGPRSQLTVAARGHGHSLQG QAQAHQGVVVNMESLQSHKMEVFTGSQPYVDVSGGELWINILTESLKYGLTPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVHHLEVITGKGDVLN CSEKQNDDLFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFTSDQEHLISTRNTFDYIEGFVIINRTGLLNNWRSSFNPQDPVHASQFKSD GKTLYCLELAKYFRKDERDAAHEEVMDLLSQLRYIASTLFISEVPYIDFLDRVHISEVKLREASSLASWVKANKEHFGRTQHRHKFTSDKTLLQFICDKA QQWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10005317 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	2.6	0.9280
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	4.0	0.9279
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	5.0	0.9079
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	6.3	0.9027
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10016815 [exp]	10.4	0.8955
AT1G59740			Major facilitator superfamily ...		Lus10007437 [exp]	15.5	0.8664
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	16.2	0.9102
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017013 [exp]	18.4	0.8692
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	19.3	0.9089
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	19.4	0.9038

Compare expression of checked genes

Lus10005317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.