Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13470 100 / 4e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039574 [exp] 225 / 5e-72 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203900 [exp] 119 / 2e-34 AT5G13470 104 / 1e-28 unknown protein Potri.001G020700 [exp] 114 / 4e-32 AT5G13470 103 / 5e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005318 pacid=23154626 polypeptide=Lus10005318 locus=Lus10005318.g ID=Lus10005318.BGIv1.0 annot-version=v1.0 ATGTCTCTGGTGGATTACGCTTCCTCCTCGGACGACGACGACAACTTGCCGGAGGAATTAGCTACTGAACAGGGACGGCTCGTTTCTCAACCTCCACGCG AACGTCAGGTTCAGGGTCCGCAACCGAATCCCTCTCCTCTTCCTCCTCCCAGCAGCAAACAGATGCATGGGTTTTCATCAAATCAGCCGCAAGGAAGTGC TCCACCGCAATCAACGTATGAGAAACTTCCTGATGCTTCGCTTCTTCTGAACTCTCCATCTATTTCGGCTCTGAGAGGAAGTGATCATGCTTCTTGGGTT CGACCTGTTGTGACTGAGAATACATCGCGCAAAAGAGACTCGACTGGTCTACCTTCCTCTTCCACTCATAGCAAATTGCCCAAGGGAAGCTTGCTGCACG GAAAGCATGTCCCCGATACTGCTAGCGGTATCTTGGTTCCTCCTCAACTAAGAGGAAGGAGCAATGTTGTAACAGAAGATATAGGGAAGCTGTTTGTAAA AGGACCCGCAGCTTCCTCATCTCGGTAG
AA sequence Show only first row Show all	>Lus10005318 pacid=23154626 polypeptide=Lus10005318 locus=Lus10005318.g ID=Lus10005318.BGIv1.0 annot-version=v1.0 MSLVDYASSSDDDDNLPEELATEQGRLVSQPPRERQVQGPQPNPSPLPPPSSKQMHGFSSNQPQGSAPPQSTYEKLPDASLLLNSPSISALRGSDHASWV RPVVTENTSRKRDSTGLPSSSTHSKLPKGSLLHGKHVPDTASGILVPPQLRGRSNVVTEDIGKLFVKGPAASSSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13470			unknown protein		Lus10005318 [exp]	0	1
AT4G08280			Thioredoxin superfamily protei...		Lus10003739 [exp]	1.4	0.7814
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	3.5	0.7640
AT1G27435			unknown protein		Lus10041533 [exp]	4.0	0.7751
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	7.9	0.7151
AT3G57930			unknown protein		Lus10031233 [exp]	8.9	0.7085
AT5G44710			unknown protein		Lus10001221 [exp]	9.2	0.6994
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	10.8	0.7088
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	12.2	0.7219
					Lus10014667 [exp]	13.3	0.7306
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10040856 [exp]	17.6	0.6541

Compare expression of checked genes

Lus10005318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.