Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 379 / 5e-125 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT5G12440 248 / 9e-74 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G21100 216 / 3e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G63450 194 / 8e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 184 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 142 / 4e-36 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT3G52980 107 / 4e-14 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G51530 71 / 5e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 44 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 43 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039575 [exp] 954 / 0 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 284 / 1e-87 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 240 / 3e-75 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 237 / 2e-70 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 223 / 2e-65 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 222 / 2e-64 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006379 [exp] 206 / 3e-59 AT2G05160 467 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10027350 [exp] 191 / 1e-53 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 186 / 4e-53 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204300 [exp] 598 / 0 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 504 / 2e-171 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 323 / 7e-102 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 312 / 7e-98 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255400 [exp] 289 / 4e-89 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050600 [exp] 287 / 2e-88 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G221100 [exp] 151 / 3e-39 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 149 / 2e-38 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 68 / 1e-12 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.001G196500 [exp] 44 / 0.0002 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005319 pacid=23154611 polypeptide=Lus10005319 locus=Lus10005319.g ID=Lus10005319.BGIv1.0 annot-version=v1.0 ATGGATGGATATGAAGCAACGAGGACAGTGTTCTCTAGAATCAAGACCTTAGACGCAGAGAATGCTTCGAAAATCATGGGTCTCCTCCTGATACAAGACC AAGGTGACAAGGAGATGATCAGATTAGCTTTCGGCTCGGATACTCTGCTTCACGCAGTCATACTCCAAGCCAAGAAAGAGCTTGGACTCTCTTCTTCTTC TCCTTCAGCAAGCTCTGCATCCAGTCCTTCCTCTGCTTCTTCCCCTGTTCTCTTGTCTAGGCAGACTTCATCCCTCAACCCTGCCTCTCTTCCCTTTTAC TCCAGAGCAAGTTCTGACCTGGTCGATGATTTTCAGCTCCATGATCACTTGTCTTTCCTCAACGAACCCAGCTCCGGATACCTTTCCCCTGCAAAAAGAT CAGATCTTGCTTACTGGGGAGGAGGAGGGCCTTTTAGCCACAGGAGGAGCTGCTCAGTGAGTGATGTTTTGGGTGCTGAGGATATTAATTCTGCAGGTAT TGGGTGGAGGCCTTGTCATTACTTTGCTAGAGGGTTTTGTAAGAATGGAAGCAAGTGCGGGTTTGTTCACGGTGATGGGTCTGACGCTGCAAGCTTGGTG GGTTCACCTGACGGTAAGATAGATATGATGATGGAGCAGTCCCATGAAATGCTTAGATCTAAGAGATTGGCTGCTGCTGCTGCTGCTTTGATGATGGGTG ATGATATGCACAAATTTGGGAGATATAGGCTTGATAGAAACGATTTGGTGAACCCAGCTTCTAGGCAGATCTACTTGACCTTCCCAGCAGATAGCACTTT CAGAGAAGAAGATGTGTCCAATTATTTCAGCATTTATGGGCCAGTTGAAGATGTGAGGATTCCATATCAGCAGAAGAGGATGTTTGGGTTTGTGACATTT GCTTACCCTGAGACTGTGAAGTTAATCTTGGCAAAAGGGAATCCACACTTTGTTTGTGATGCAAGAGTTCTTGTCAAGCCTTACAAGGAGAAACCCAAAG TTCTAGACAAGAAGCAGTACCAACACCAGCAACTTGATGGTGGGGAATTTTTACCTTGTGGTACCCCAACTGGCCTAGATGCAAGAGAACCTTTTAATCA CCCACTTGGTATAAGAATGTCTTGCAAAACTCAAGACTTGTTGTGGAGGAGGAAGCTGGAGGAACAAGCTGATTTGCAGCAAGCCCTTGAGCTTCAAAGT AGGAGGCTAATGGGTTTGCAGCTTCTTGATGTGAATAAACATCACCAAAGGGCTCTTTCCACTGGCAGCCCTATCCCTTCCCCAACCCACCATCCTCAAT CTCCCAATCTCTTCTCTCCACTACGCAGCAGCTCCATGAAATTTCAAGATAACTGCAGCAGCAGCAGCAGTTTGCCAGCTGTATCTATTGTCCCACCTGA GAGACAACAATGGCTGACATCAATTGATGCTTCTGGCAAAGAATCTAATGGCCATGTAGGGAAAGAAAACTCTCATCATGAAAGTAATGATATGCTGCAA CAAAGCAAAGCTTTTTCCTTTTCTTTTGGCAGTTTTGAGCACATCCTTCCTGATAGTCCCTTTGCATCTCCTACCAAAGACACTGGGGAATATTTCTCTG CTGCTGCTGCAGATGCTTCTTCACTAGACATGGGAAGTTTCAGATCATTCAATTGTAAAATGCCTAGGTTTTTAGCAGGACATGGAGCCATTGTTGGTGG TGGGATGCATGGACGGACAGGGGTTCCAACCTGCCCTGTTGGAATTTAG
AA sequence Show only first row Show all	>Lus10005319 pacid=23154611 polypeptide=Lus10005319 locus=Lus10005319.g ID=Lus10005319.BGIv1.0 annot-version=v1.0 MDGYEATRTVFSRIKTLDAENASKIMGLLLIQDQGDKEMIRLAFGSDTLLHAVILQAKKELGLSSSSPSASSASSPSSASSPVLLSRQTSSLNPASLPFY SRASSDLVDDFQLHDHLSFLNEPSSGYLSPAKRSDLAYWGGGGPFSHRRSCSVSDVLGAEDINSAGIGWRPCHYFARGFCKNGSKCGFVHGDGSDAASLV GSPDGKIDMMMEQSHEMLRSKRLAAAAAALMMGDDMHKFGRYRLDRNDLVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVEDVRIPYQQKRMFGFVTF AYPETVKLILAKGNPHFVCDARVLVKPYKEKPKVLDKKQYQHQQLDGGEFLPCGTPTGLDAREPFNHPLGIRMSCKTQDLLWRRKLEEQADLQQALELQS RRLMGLQLLDVNKHHQRALSTGSPIPSPTHHPQSPNLFSPLRSSSMKFQDNCSSSSSLPAVSIVPPERQQWLTSIDASGKESNGHVGKENSHHESNDMLQ QSKAFSFSFGSFEHILPDSPFASPTKDTGEYFSAAAADASSLDMGSFRSFNCKMPRFLAGHGAIVGGGMHGRTGVPTCPVGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	0	1
AT5G23200			unknown protein		Lus10010192 [exp]	4.2	0.8553
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	4.7	0.8773
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	4.7	0.8779
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	5.2	0.8771
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	7.7	0.8587
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	8.0	0.8604
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	10.2	0.8657
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	10.7	0.8503
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	11.0	0.8592
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	11.5	0.8546

Compare expression of checked genes

Lus10005319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.