Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63460 243 / 1e-70 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G18830 180 / 7e-49 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039578 [exp] 719 / 0 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019752 [exp] 572 / 0 AT3G63460 1147 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016373 [exp] 535 / 2e-180 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055400 [exp] 533 / 2e-179 AT3G63460 1351 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.001G260900 [exp] 521 / 1e-174 AT3G63460 1347 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07304 [flax] [poplar] SRA1 Steroid receptor RNA activator (SRA1)
Representative CDS sequence Show only first row Show all	>Lus10005322 pacid=23154610 polypeptide=Lus10005322 locus=Lus10005322.g ID=Lus10005322.BGIv1.0 annot-version=v1.0 ATGTATATATCTGACGTTGCTTGCTTGGTGTATGAACAGTTTGCTCAAAATGAGGAATGGAGTATGCTCTGTGATGTGCTTGCTTCACGACTAATGGCTG CTGGTAATACTTTGGCTGCGACTCTTTGTTATATATGTGCTGGAAATATAGACAAGACTGTTGAAATTTGGTCAAGAAGTTTGTCATGCGACCGTGAGGG AAAATCTTATGTTGACCTTCTTCAGGATTTGATGGAGAAGACTATTGTTTTCGCTTTGGCAAGTGGACAAAAGCGCTTTAGTGCATCTCTGTGCAAGCTT GTTGAGAAATATGCTGAGATTTTGGCAAGTCAGGGGCTTTTAACGACTGCTATGGAGTACCTGAAACTCCTGGGTTCTGATGAATTATCTCCTGAGTTGG TTGTCTTAAGAGATCGCATAGCACTTTCTGCAGAGCCTGCCACAGAAGAACATACGACTGCAGCTTACGATAATTCACAATTTCAGAGTGAACAATCCAG TTTCAGTATGACTAATGCGTCCCATTCGTTTTATCCGGAAACTACACCATCACACTTGAATCAGCATGGTGTTCCTAGCTCCACGTATGGAGAAAATTAT CAGCAGAGTCTTGGCTCTTCTTACGGAACAGGATATGGAACAACACCATATCAACCTGCTCCCCAGGCCAGTCCTTACCAGCCTGCTGTACCTTCTCAAA TGTTTGTTCCATCCCAGGCACCTCAGATGCCTCAGTCAAATTTTGCTCCACCACCTCCTAGCAGTCAACAAGCTGTAAGGACCTTTGTCCCTTCAAGCGT TCCAATCGTCAGAAGTGCAGATCAGTACCAGCAGGCTACTTTGGGATCGCAGTTATATCCTGGGGCTTCAAATCCTACATTCCAACCTGTACAGCCTCCT GCTCCTTCTCAAGCCCCAATTGCAGGAATCCCAAATGTTATGACTCCCACATCAACTCCAGTGGGATTTAGACCTGTACCAAATTCCAGTCACAGACCAA GCACGAATTCATACCAACCATCCGCTCCTAATCAGATAGCGTCGTCGCAACCAGCTGTGGCACCAGCTGCTCCACCTCCTACCGTACAGACCGTTGATAC TTCAAACGTTCCTGCTCATCATAAACCTGTGGTTGCAACCTTGTCAAGACTATTTAATGAAACATCAGAAGCTTTGGGAGGCGCACGGGCAAACCCAGCT AAGAAGAGAGAAATCGAAGATAATTCAAAGAAAATCGGTGCCCTGTTTGCTAAACTCAACAGTGGTGATATCTCCAAGAATGCTTCAGACAAGCTTATTC AGCTGTGTCAGGCATTAGACAAAGGCGATTTCAGCACAGCCCTGCAAATTCAGGTGTTCCTCACAACAAGCGAGTGGGACGAGTGCAACTTCTGGTTGGC GACACTTAAACGTATGATCAAGTCTCGACAAGTGGCTGGTGTAAGAAGTTGA
AA sequence Show only first row Show all	>Lus10005322 pacid=23154610 polypeptide=Lus10005322 locus=Lus10005322.g ID=Lus10005322.BGIv1.0 annot-version=v1.0 MYISDVACLVYEQFAQNEEWSMLCDVLASRLMAAGNTLAATLCYICAGNIDKTVEIWSRSLSCDREGKSYVDLLQDLMEKTIVFALASGQKRFSASLCKL VEKYAEILASQGLLTTAMEYLKLLGSDELSPELVVLRDRIALSAEPATEEHTTAAYDNSQFQSEQSSFSMTNASHSFYPETTPSHLNQHGVPSSTYGENY QQSLGSSYGTGYGTTPYQPAPQASPYQPAVPSQMFVPSQAPQMPQSNFAPPPPSSQQAVRTFVPSSVPIVRSADQYQQATLGSQLYPGASNPTFQPVQPP APSQAPIAGIPNVMTPTSTPVGFRPVPNSSHRPSTNSYQPSAPNQIASSQPAVAPAAPPPTVQTVDTSNVPAHHKPVVATLSRLFNETSEALGGARANPA KKREIEDNSKKIGALFAKLNSGDISKNASDKLIQLCQALDKGDFSTALQIQVFLTTSEWDECNFWLATLKRMIKSRQVAGVRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	0	1
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	5.5	0.7708
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	9.8	0.8266
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	14.0	0.7620
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	16.6	0.6599
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	17.3	0.7716
AT1G19835			Plant protein of unknown funct...		Lus10033160 [exp]	19.7	0.7578
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	23.4	0.6600
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10020489 [exp]	32.0	0.6981
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10015185 [exp]	41.6	0.7254
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	42.0	0.6778

Compare expression of checked genes

Lus10005322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.