Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63460 880 / 0 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G18830 692 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G58230 74 / 9e-14 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 74 / 1e-13 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 71 / 1e-12 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G11160 70 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 66 / 4e-11 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G13480 65 / 1e-10 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 61 / 1e-09 TAF5 TBP-associated factor 5 (.1) AT5G27945 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039578 [exp] 1257 / 0 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016373 [exp] 1139 / 0 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019752 [exp] 942 / 0 AT3G63460 1147 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016374 [exp] 199 / 2e-61 AT3G63460 181 / 4e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019751 [exp] 197 / 2e-60 AT3G63460 181 / 2e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10020916 [exp] 74 / 7e-14 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 74 / 8e-14 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 74 / 8e-14 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 73 / 3e-13 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055400 [exp] 1003 / 0 AT3G63460 1351 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.001G260900 [exp] 990 / 0 AT3G63460 1347 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.002G216200 [exp] 76 / 2e-14 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 76 / 3e-14 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 73 / 2e-13 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G050100 [exp] 71 / 1e-12 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.009G135100 [exp] 69 / 2e-12 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.005G144400 [exp] 69 / 8e-12 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.001G026800 [exp] 64 / 3e-10 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G399600 [exp] 60 / 5e-09 AT3G15354 1003 / 0.0 SPA1-related 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10005323 pacid=23154615 polypeptide=Lus10005323 locus=Lus10005323.g ID=Lus10005323.BGIv1.0 annot-version=v1.0 ATGGCATGTATCAAGTCGGTAAACAGATCCGCGTCCGTGGCGTTTGCGCTGGACGCTCCCTATATGGCTGCCGGGACGATGGCTGGTGCTGTGGATCTGT CCTTCAGCTCCTCGGCCAACATTGAGATTTTCAAGCTTGATTTTCAATCGGAGGATCATGAACTCCCGGTGGTAGGGGAGTCGCAGAGCACCGAGAGATT TAACCGTATTGCTTGGGGCAAAAATGGATCCGGTTCCGAACAGTATGGCCTTGGACTCATTGCTGGTGGCCTCGTTGACGGGACCATTGGTATCTGGAAT CCTTCTGCGTTGATCCGTTCTGAATCAAATGAAGGAGCTTTTGTTGCTAGTCTTTCAAATCACAGAGGCCCCGTTCGTGGCCTTGATTTTAATTCTTTCA CCCCAAATTTACTTGCGTCGGGTGCTGATGATGGCGAGATTTGCATCTGGGATTTGGCATCGCCTGCGGATCCTTCACACTTCCCACCTCTGAAGGGCTC TGGCTCTGCCCATCAAGGTGAGATCTCATATGTTTCTTGGAACAGCAAGGTCCAGCATATATTGGCTTCTACTTCACATAATGGAATCACTGTGGTTTGG GACTTGAAGAAGCAAAAAAAAGTTATATCTGTTTCAGATCCAATGGGTAGGAGGAGCTCTGTTGTGCAGTGGCACCCTGATGTTGCCACTCAGCTTGTAG TTGCATCAGATGATGACAGCTCTCCTACGTTAAAGCTTTGGGATATGCGAAATATACTGGAACCTGTCAAAGAGTTTGCTGGACACACCAAAGGTGTAAT TGCTATGGCATGGTGTCCCAGTGACAGCTCCTATTTGCTTACTTGTGCTAAAGATAATCGAACTATCTGCTGGAACACTGTAACTGGAGAGATTGCTTCT GAGTTGCCTTCGGGCAACAATTGGAACTTCGATGTACATTGGTACCCTAAAATTCCAGGAGTTATAGCAGCCTCTTCTTTCGATGGAAAGATTGGACTTT ACAATATTGAGGGATGCGATCATTATGGGATCGGAGAGCCTGACTTCGGAGCAGTAGTACAATTAAGAGCCCCAAAGTGGTACAAAAGGCCTGCTGGGGT GTCCTTTGGATTTGGAGGAAAGCTTGTGTCATTTAATCCCAAATCATCAACTTCAGGGCCTTCAGAGGTTCTTTTGCACAGCCTGGTAACAGAACAATCT TTAGTGACTCGGTCGTCTGAATTTGAAACTGCAATAAACAACGGAGAGAAATCATCACTTAAGTTGTTATGCGAAAGGAAATCAATGGAGTCTAAATCTG AGGATGACCAACAGACCTGGGGCTTCCTCAAGGTTATGTTTGAAGAAGATGGGACTGCTAGGTCAAAGATGCTTAACCACCTTGGTTTCAGTTTGCCTGT TGAAGAAAAACCTCCAGTTGTTGATGATCTTAGCCAGGAGATCAATGCCCTTCAGCTAGCCGATGTTACAACAGAGAAAGTTGGATATGTGGAACAGAGA GAGTCTGTCATGTTTGCTGGAGATGACGGAGAAGATTTCTTTAATAATCTTCCGAGCCCTAAAGTCGATACCCCTGTGTCAGTGTCAGCTGGCGCCACTT ATCCCCACATTGACGAAGAAACCAGACAAGAACCTGAAGAAATGGAAGAGAGTGCTGACCCATCATTCGATGATGCTATTCAGCGTGCTTTGGTGGTGGG AGACTATAAAGGTGCAGTCGCACAATGCATGTCTGCAAATAAGAAGGATGATGCTTTGCTTATTGCACATCTTGGTGGACCTGCCTTGTGGGAGAATACA CGTGATCAGTGTCTTAAAATGAATCGGTCACCTTACATGAAGATTGTTTCTGCGATGGTGAACAATGACCTTTTGAACCTGGTTAATACAAGGCCTCTGA AATGTTGGAAGGAAACAGTTGCCCTTCTATGCACAGTACGTTTTTAG
AA sequence Show only first row Show all	>Lus10005323 pacid=23154615 polypeptide=Lus10005323 locus=Lus10005323.g ID=Lus10005323.BGIv1.0 annot-version=v1.0 MACIKSVNRSASVAFALDAPYMAAGTMAGAVDLSFSSSANIEIFKLDFQSEDHELPVVGESQSTERFNRIAWGKNGSGSEQYGLGLIAGGLVDGTIGIWN PSALIRSESNEGAFVASLSNHRGPVRGLDFNSFTPNLLASGADDGEICIWDLASPADPSHFPPLKGSGSAHQGEISYVSWNSKVQHILASTSHNGITVVW DLKKQKKVISVSDPMGRRSSVVQWHPDVATQLVVASDDDSSPTLKLWDMRNILEPVKEFAGHTKGVIAMAWCPSDSSYLLTCAKDNRTICWNTVTGEIAS ELPSGNNWNFDVHWYPKIPGVIAASSFDGKIGLYNIEGCDHYGIGEPDFGAVVQLRAPKWYKRPAGVSFGFGGKLVSFNPKSSTSGPSEVLLHSLVTEQS LVTRSSEFETAINNGEKSSLKLLCERKSMESKSEDDQQTWGFLKVMFEEDGTARSKMLNHLGFSLPVEEKPPVVDDLSQEINALQLADVTTEKVGYVEQR ESVMFAGDDGEDFFNNLPSPKVDTPVSVSAGATYPHIDEETRQEPEEMEESADPSFDDAIQRALVVGDYKGAVAQCMSANKKDDALLIAHLGGPALWENT RDQCLKMNRSPYMKIVSAMVNNDLLNLVNTRPLKCWKETVALLCTVRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	0	1
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	1.4	0.9660
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	3.5	0.9389
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	4.0	0.9411
AT4G24610			unknown protein		Lus10000766 [exp]	4.0	0.9494
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	4.2	0.9638
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	5.1	0.9300
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	5.7	0.9373
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	7.2	0.9380
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	7.3	0.9497
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	7.7	0.9393

Compare expression of checked genes

Lus10005323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.