Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28420 245 / 3e-83 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) AT1G80160 165 / 5e-52 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT1G15380 159 / 1e-49 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G32090 59 / 2e-11 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT5G57040 45 / 5e-06 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039579 [exp] 399 / 7e-144 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10014480 [exp] 169 / 3e-53 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10030070 [exp] 168 / 4e-53 AT1G80160 247 / 7e-85 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10025971 [exp] 159 / 3e-49 AT1G15380 165 / 3e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014269 [exp] 156 / 3e-48 AT1G15380 166 / 2e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10006122 [exp] 55 / 1e-09 AT2G32090 199 / 3e-67 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10010552 [exp] 54 / 3e-09 AT2G32090 197 / 3e-66 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10017158 [exp] 44 / 3e-05 AT5G57040 254 / 7e-87 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10021573 [exp] 41 / 0.0001 AT5G57040 163 / 2e-51 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055500 [exp] 262 / 4e-90 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.001G171600 [exp] 169 / 1e-53 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 165 / 2e-51 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.004G223300 [exp] 163 / 1e-50 AT1G80160 187 / 1e-60 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 161 / 1e-50 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.005G117000 [exp] 161 / 4e-50 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G129200 [exp] 159 / 8e-50 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 159 / 3e-49 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.010G087000 [exp] 52 / 2e-08 AT2G32090 189 / 3e-63 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.018G056200 [exp] 40 / 0.0004 AT5G57040 253 / 2e-86 Lactoylglutathione lyase / glyoxalase I family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005324 pacid=23154606 polypeptide=Lus10005324 locus=Lus10005324.g ID=Lus10005324.BGIv1.0 annot-version=v1.0 ATGGAGGTGCAAGAGGAGAAGATTACCAATAGCTATAGCAACGGCTACCATCATCATATTGATAATGAGGATATGGATGAGCAAGTTAAGGATAAGGAAG GGCCTCCTCCAATGATGGCGTTGAACCATGTGTCCAGACTTTGCAGAGACGTCCAGAAATCCCTTGATTTCTACACCAAAGTCCTTGGGATGGTCTTGAT TCAGAGGCCTGGTGCTTTCAAATTCGACGGAGCTTGGCTCTACAATTACGGGGTTGGGATTCACTTGGTCCAGGCTAAAGATGAAGATAGGTTGCCTGAC AAAGACCGGGAACTTGATCCCATGGATAACCACATCTCTTTCCAGTGCGAAGATATGGAAGAAATGGAGAGGAGGCTCAAGGAATTTGATGTCAAGTACA TGAAGAGGACCATAGAAGAAGAGAATAATGGGACCAAGATTGACCAAATGTTCTTCGACGACCCAGATGGGTTCATGATTGAGATATGCAACTGCGAGAA TCTGAAGCTGGTTCCTGCTGGCTCCTTGGGCAAAATTAGAATCCCTATCGATCGTCATACTCCACCTCTTGAGCTCTCCACCCATGGCGGCCGCGACCCA CCTCACGAGCACGCCGATTAA
AA sequence Show only first row Show all	>Lus10005324 pacid=23154606 polypeptide=Lus10005324 locus=Lus10005324.g ID=Lus10005324.BGIv1.0 annot-version=v1.0 MEVQEEKITNSYSNGYHHHIDNEDMDEQVKDKEGPPPMMALNHVSRLCRDVQKSLDFYTKVLGMVLIQRPGAFKFDGAWLYNYGVGIHLVQAKDEDRLPD KDRELDPMDNHISFQCEDMEEMERRLKEFDVKYMKRTIEEENNGTKIDQMFFDDPDGFMIEICNCENLKLVPAGSLGKIRIPIDRHTPPLELSTHGGRDP PHEHAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Lus10005324 [exp]	0	1
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10027046 [exp]	3.9	0.7777
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	6.9	0.7828
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	11.5	0.7688
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	13.5	0.8179
AT3G61930			unknown protein		Lus10030203 [exp]	13.6	0.8265
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	15.6	0.8530
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	25.1	0.7415
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	27.8	0.6826
AT3G61930			unknown protein		Lus10002685 [exp]	30.4	0.7643
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	37.1	0.8001

Compare expression of checked genes

Lus10005324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.