Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13790 234 / 6e-77 MADS AGL15 AGAMOUS-like 15 (.1) AT3G57390 168 / 3e-51 MADS AGL18 AGAMOUS-like 18 (.1.2) AT1G24260 139 / 5e-40 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G61120 136 / 4e-39 MADS AGL13 AGAMOUS-like 13 (.1) AT4G09960 134 / 2e-38 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G57230 134 / 3e-38 MADS AGL16 AGAMOUS-like 16 (.1.2) AT1G26310 134 / 5e-38 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT4G24540 133 / 5e-38 MADS AGL24 AGAMOUS-like 24 (.1) AT4G37940 133 / 6e-38 MADS AGL21 AGAMOUS-like 21 (.1) AT2G42830 133 / 7e-38 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039580 [exp] 485 / 5e-176 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10034663 [exp] 142 / 7e-41 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005302 [exp] 140 / 4e-40 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 138 / 4e-39 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10025719 [exp] 134 / 6e-39 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10035942 [exp] 138 / 1e-38 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 130 / 2e-37 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003124 [exp] 129 / 6e-36 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 128 / 9e-36 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055700 [exp] 324 / 2e-112 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.006G048700 [exp] 220 / 1e-71 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.007G010800 [exp] 149 / 5e-44 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.012G132600 [exp] 138 / 1e-39 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.005G155300 [exp] 135 / 9e-39 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G150501 [exp] 136 / 1e-38 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 135 / 1e-38 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.013G104900 [exp] 134 / 2e-38 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.002G105600 [exp] 134 / 2e-38 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G115500 [exp] 134 / 3e-38 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10005325 pacid=23154599 polypeptide=Lus10005325 locus=Lus10005325.g ID=Lus10005325.BGIv1.0 annot-version=v1.0 ATGGGCAGGGGAAAGATTGAGATCAAAAGGATTGAGAATGCAAATAGCAGGCAAGTCACCTTCTCCAAGAGGAGAACTGGGCTGCTTAAGAAAGCTCAGG AGCTTTCCATTCTCTGTGATGCTGAGGTTGCTGTCATTATCTTCTCCAATACCGGCAAGCTCTTTGAGTTCTCTAGCTCTGGCATGAAGAGAACGCTTTC AAGGTATCACAAGTGTCTGGATTCGGCAGAGCCAGCCAAACCAGAACAGAAACCAGATATTCAGGCGCAAAGTACCATCCCAAGCCACACTTTTGTTGTC CAGAAACAAAATTCAAAGGAACTGGATGCTTTAAGAGAGGAAATTGCAAAGCTACAAACGAAACAAATGAGACTCTTGGGGAAGGACTTGAATGGCTTGA GCTTGAAAGAGTTGCAACAACTAGAACATCAATTGACTGATGGTTTATCATGCGTGAAAGATAAAAAGGAGCAATTGTTGATGGAGCAACTTGAGCTTTC AAGAGTTCAGGAACAACGAGCAAAGCTGGAGAATGAGACTTTGCGCAGACAGGTTGAAGAGCTTCGAGGCTTCTTCCCGTCGGCTGATCGTTCAGTGCCG AGTTACCTCGAGTTCCAGTCTATGGAACAAAAAAATTCCAGCATAACAACAAATGGATGCAAAAGCCCTGATGCAGCCTACAACTGCTCAACTGAGAAGG GAGATTCGGACACTACCTTGCATTTAGGGCTTCCAACCAATGCGTACCGCAAGAGGAAGGCACCGGAGACAGAAAGCTGCTCAACCGAATCAGAGAGTTA A
AA sequence Show only first row Show all	>Lus10005325 pacid=23154599 polypeptide=Lus10005325 locus=Lus10005325.g ID=Lus10005325.BGIv1.0 annot-version=v1.0 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELSILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYHKCLDSAEPAKPEQKPDIQAQSTIPSHTFVV QKQNSKELDALREEIAKLQTKQMRLLGKDLNGLSLKELQQLEHQLTDGLSCVKDKKEQLLMEQLELSRVQEQRAKLENETLRRQVEELRGFFPSADRSVP SYLEFQSMEQKNSSITTNGCKSPDAAYNCSTEKGDSDTTLHLGLPTNAYRKRKAPETESCSTESES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	0	1
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10025632 [exp]	1.4	0.8128
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Lus10038822 [exp]	4.2	0.7752
AT2G40070			unknown protein		Lus10002493 [exp]	5.1	0.7324
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	6.2	0.8211
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10021044 [exp]	8.3	0.7389
					Lus10007681 [exp]	9.2	0.7420
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	9.4	0.7399
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	10.2	0.7842
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	13.2	0.8104
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	14.1	0.7702

Compare expression of checked genes

Lus10005325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.