Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039581 [exp] 451 / 4e-160 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055800 [exp] 155 / 7e-45 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10005326 pacid=23154600 polypeptide=Lus10005326 locus=Lus10005326.g ID=Lus10005326.BGIv1.0 annot-version=v1.0 ATGGTACTCTTGATTCAGAAGATCAACAAGCTCTATTCCAAGCTAGAGAATATTAATCACCAGCACAAGCAGCATGATGATCCCCTGCCGTTACTACGGG CAGCAGCTCTCCAAGCTTTCCGATCCAAAGTTTCCAGCTTGATCACCAATCTGTTGTTAACCACCCCAAACCCAGACGACACCAAACTCTTCCTGTCCCT TCCATGGCTCCGCAGCTGTTTCCAGCTCCTACCCATGATCAACGACGCCTTCGCCAAGCTAGTGGTGGATATCGACTATCCCATGAACAAGTGGCAAGAT AGATCTGTTCACCTATACCTCACCCACACCTTGAACTTGCTGGACCTCCTCAACTCCATAACCTCGTCCATAGCTTCATTAGGCCAATCGAGACTCTCTC TGTCTCATGCTCTGTCCCAAGTCGTCAACGGATCACCTTCTTCCTCTGCTGCGTTAAACCGGCTCAAGATGACGACGACAACAACCGCAACCCAGTTGGA CAATTCGTCCAGGAAGGTCGAGGTTCATGAGGAAAAGGGTGATTATGAGGTAAAGAACGGATCTTTATGCGAGAGAGAGGCGATTATCCATGAAGCTTTA ATGGAAATGAAGAGTGTTGGGTTCTGGGTTTCTTCAATAGTTCTTGCTTGTTTGAGTGGAGATTCTAAAGCTTACTTGGAGGAACAATCCACGAGGCCTG TTTTGATTGCTAGTTTGACCGGGATCGAGTCCGTCATGTGGGGATTTGTGAAGGAGAAAGGGATTGTGGCGAAAGAGGTTAAGGATTTGAATGATTCGGC TGCCAGAATTGCTACCGAGATTTCATCAAACAGAGGAGGAGGAGTTTTAGAGGTGGCAGGGGAGATGCAGAGGAAGTTAGAGGTGTTTGAGAAGCTGCTT GATGGATTAAGAGTGGACGTGGATCGACTGTTTTCAGAGATCTTGAATGGAAGGAATGAATTGCTTCGGTGTTTTCTTCATGGAAATCATTAG
AA sequence Show only first row Show all	>Lus10005326 pacid=23154600 polypeptide=Lus10005326 locus=Lus10005326.g ID=Lus10005326.BGIv1.0 annot-version=v1.0 MVLLIQKINKLYSKLENINHQHKQHDDPLPLLRAAALQAFRSKVSSLITNLLLTTPNPDDTKLFLSLPWLRSCFQLLPMINDAFAKLVVDIDYPMNKWQD RSVHLYLTHTLNLLDLLNSITSSIASLGQSRLSLSHALSQVVNGSPSSSAALNRLKMTTTTTATQLDNSSRKVEVHEEKGDYEVKNGSLCEREAIIHEAL MEMKSVGFWVSSIVLACLSGDSKAYLEEQSTRPVLIASLTGIESVMWGFVKEKGIVAKEVKDLNDSAARIATEISSNRGGGVLEVAGEMQRKLEVFEKLL DGLRVDVDRLFSEILNGRNELLRCFLHGNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	0	1
					Lus10016654 [exp]	1.7	0.8533
AT2G46080			unknown protein		Lus10007920 [exp]	2.0	0.8760
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	2.6	0.8901
					Lus10018550 [exp]	5.7	0.8235
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	6.0	0.8391
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	6.5	0.8318
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	8.8	0.8248
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	10.2	0.8370
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10025772 [exp]	10.4	0.8092
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	12.0	0.8067

Compare expression of checked genes

Lus10005326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.