Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 448 / 2e-154 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G52020 370 / 9e-124 SCPL39 serine carboxypeptidase-like 39 (.1) AT3G52000 355 / 4e-118 SCPL36 serine carboxypeptidase-like 36 (.1) AT4G30610 350 / 1e-116 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G52010 346 / 1e-114 SCPL37 serine carboxypeptidase-like 37 (.1) AT2G05850 346 / 2e-114 SCPL38 serine carboxypeptidase-like 38 (.1) AT5G08260 345 / 3e-114 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G02110 343 / 8e-114 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24000 332 / 2e-109 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT5G23210 319 / 5e-104 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039582 [exp] 841 / 0 AT3G52020 372 / 1e-121 serine carboxypeptidase-like 39 (.1) Lus10019749 [exp] 621 / 0 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10016377 [exp] 617 / 0 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1) Lus10019748 [exp] 615 / 0 AT3G63470 471 / 2e-161 serine carboxypeptidase-like 40 (.1) Lus10019747 [exp] 613 / 0 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10019954 [exp] 350 / 3e-116 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 341 / 2e-112 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 340 / 6e-112 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 322 / 1e-105 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055900 [exp] 455 / 4e-157 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.001G261100 [exp] 443 / 2e-152 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 425 / 2e-145 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.006G183200 [exp] 355 / 2e-118 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 347 / 3e-115 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.007G072300 [exp] 344 / 4e-114 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.018G105700 [exp] 342 / 2e-113 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 336 / 5e-111 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.010G220100 [exp] 322 / 1e-105 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041800 [exp] 317 / 1e-103 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10005327 pacid=23154623 polypeptide=Lus10005327 locus=Lus10005327.g ID=Lus10005327.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGCCCTCCTCAACAACTGATCTCCTTGCCGTAATTTCGATTCTCGTCATATCATCGTCATGTTTTCCGGCGCCGGCGCAATGCCGGAACC AAGCCCAGAAACTGAACAAGTTGCTCCAAGCAAAGATGAGGAACGAGGTCGATACGGCACCGTTTAAGGCAGTTGCATACGAGAAAATTGCTTCGAGATT AGTGGATCTCCCTCCAGGTGGTGGTTCCAAAAAGGAAGACGATCTCATCGGCCGGTTGCCAGGTCAGCCCGCCGTGACGTTCAAGCAATACGGCGGCTAC GTTAACGTGGACCCGGTGAACGGCAGGAACATGTATTACTACTTCGTCGAAGCACAGCATCCAAACAAGGACGAATTGCCTCTTGTTCTCTGGCTCAATG GAGGGCCTGGGTGCTCGTCTTTGGCATATGGAGCAATGACGGAGCTGGGCCCATTTAGAGTTGGCACCGATGCCAAGACTCTCTACGTCAACAAATATTC TTGGAACAAAGAGGACAACTTTGTGTTCATGCAAAATTGGCTAAAGAAATTCCCTGAATATAAAGGTCGAGATTTTTACATTACGGGAGAAAGCTATGCG GGCCACTACGTGCCTCAGCTAGCTCATAATATTCTCATGCATATGCTCCTGAACATCCTTGACAAATCAATCAACCTCAAGGGTATAATGGTAGGGAATG CGGTGTTAAATGACGAGACGGACAGCAAAGGGATGTACGATTACTTCCGGACCCACGGCATGGCATCCCCAAAAGCAGCGGCGACGGTGGAGAAGTACTG TGATTTCTCACCGGAGTTCAACGGGAATCAGACGGCGGTATGTAAAGCCGCCTACCAGGAAGTGCAGGTGTCAATCGCTCCCATCTTCCCTTACAACATC TACGTCGAAGACTGCCTTACCTACAAGGGCCCCACCCAAAAGCCCCTTCCTTTCTCCATAATAGAGTACGACGAGTGCAGCCCCGAGTACGTGGAGGAGT ATCTGAATCGAGAGGAGGTACAGAAAGCAATGCACGCAAATACCACAAACCTCCCATACCGTTGGACTGGCTGTACAGACAACATCAATTACAACCAAGC ATCCACTACCGTGATGACGGACATCCAATTCTTGTTGGCCAATAACATTTCCGTCTGGATCTATAGTGGTGACCTAGACGCAATGGTGCCGTTGACTTCG ACGCAGTTGGCGATCAAGATTATGAATGTGACGGTGGAAACAAAGTTTCATCCTTGGTTCATTGGTGGACAGGTTGGAGGGTACACGGAGACGTACAAAG AAGGTTTTACATTTGCGACGGTGAGAGGGGCGGGGCATGAAGTTCCGAGCTATCAACCCTTGAGAGCGCTTTCACTTTTCATGCATTTTATTGGTGGCAC GCCTTTGCCGAATAGTAAAAAATTTGAGGCTTAA
AA sequence Show only first row Show all	>Lus10005327 pacid=23154623 polypeptide=Lus10005327 locus=Lus10005327.g ID=Lus10005327.BGIv1.0 annot-version=v1.0 MKKKPSSTTDLLAVISILVISSSCFPAPAQCRNQAQKLNKLLQAKMRNEVDTAPFKAVAYEKIASRLVDLPPGGGSKKEDDLIGRLPGQPAVTFKQYGGY VNVDPVNGRNMYYYFVEAQHPNKDELPLVLWLNGGPGCSSLAYGAMTELGPFRVGTDAKTLYVNKYSWNKEDNFVFMQNWLKKFPEYKGRDFYITGESYA GHYVPQLAHNILMHMLLNILDKSINLKGIMVGNAVLNDETDSKGMYDYFRTHGMASPKAAATVEKYCDFSPEFNGNQTAVCKAAYQEVQVSIAPIFPYNI YVEDCLTYKGPTQKPLPFSIIEYDECSPEYVEEYLNREEVQKAMHANTTNLPYRWTGCTDNINYNQASTTVMTDIQFLLANNISVWIYSGDLDAMVPLTS TQLAIKIMNVTVETKFHPWFIGGQVGGYTETYKEGFTFATVRGAGHEVPSYQPLRALSLFMHFIGGTPLPNSKKFEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	1.4	0.9725
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	2.4	0.9688
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	3.5	0.9637
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	4.2	0.9383
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	4.2	0.9433
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	4.5	0.9184
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001542 [exp]	4.9	0.9353
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	5.9	0.9441
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	6.3	0.9496
					Lus10019304 [exp]	6.9	0.9273

Compare expression of checked genes

Lus10005327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.