Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52030 471 / 5e-165 F-box family protein with WD40/YVTN repeat doamin (.1.2) AT5G23430 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039582 [exp] 484 / 2e-166 AT3G52020 372 / 1e-121 serine carboxypeptidase-like 39 (.1) Lus10012706 [exp] 43 / 0.0005 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056500 [exp] 548 / 0 AT3G52030 475 / 1e-166 F-box family protein with WD40/YVTN repeat doamin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10005328 pacid=23154630 polypeptide=Lus10005328 locus=Lus10005328.g ID=Lus10005328.BGIv1.0 annot-version=v1.0 ATGGCCCCGACGACTGTGGACGGTGGTTCGCCACCAAGGAAGAAGAGCTCCGTTCGAGCTCCGACCAACATCTACTCCCTCAGCCACGACACCCTCTGCG TTCTCTTCTCGTACCTCGACTTGTTGGACCTCGTTCGCTGTTCCACCGTCTGCAGTTCATGGAATTCAATCATCAAAAGGTCGAAGCTTTTGCAAGGGCT GTACCTGAAGCAGGTGAGGGGAGGAAACATTTCAAGTCGAAGTAGCGATTCCTTGGACGAATCAATGAGTGTGTATCTGGAAGAGCTGGCCATGGAACGT CATAGGCGTGCTCTGATGGGTGGTTCTGCTGTTATTAACCAATGGAAAGGTCATTCAGCTGGGGTGGATCAATGCAGAATGAAAATGGGAATGATTCTTA CAGGTGTAGGGGATAAGGTTATACGTCTTTGGTCATCAGAAAATCTCAAATGTGTGGAAGAATATCAGATTCCGGATGCTGTTCGCCTTGCTGACTTTGA TTTTGATGAGACCAAGGTTGTTGGTTTATTTGGTACCAAAGTATGTATATGGAGACGCAATGGTAAGAGAAGTATCTTTCCCTCCAAGGAAGGCACATTC AGCAAGGGCTCCTGCATGAGGTACTTCGATCCGGATGCTGTGGTAGGCTGCGAGGATGGCACTGCTCGTGTATTTGACATGTACAGCAGACAGTGTTCTC GTATTATCAAGATGCACCCGGAGGCTGTATCCTGTTTGGCCTTGAGCGACGACCAATTGATTCTCAGCGGTTCCTCTTTAGGAAGGATTACAGTATCTGG TTTGCTATCTAACGAGAAGATAGCTACACTCAGACCAACTGATACCACTGGTTCCAGCTTAGTATTCTGCGGAACTACTGCTGGCTATGCATCATGTTGG GATCTTAGGAAGATGAGACGATTATGGGAAAGACGTGTTAGTTCAAATGTAGTATACTCTATTCATCACCTGCGTAATGACACATCAGCGCTCGTGGTTG GTGGAATAGACGGGGTTCTACGTGTTATTGATCAGGACACGGGAGAAGGTATTTCGAGGTATATTATGGACCACGACTCGCATCCAACTAGTTTCAGATA TCCGCATGGAGTAGGTGAACGAAGGCGTGGGAAATGTCTACCAAAAGGTACCCTTATCGATGGAGTACCGAGAAGTGCTCGTCCTCCCATTACATGCTTG GCAGTTGGGAGGGAGAAGGTTGTGACTACACACAATGGTACTCATGTGAGACTTTGGAAGTTTAAGGGTAGGAGAAGCTAA
AA sequence Show only first row Show all	>Lus10005328 pacid=23154630 polypeptide=Lus10005328 locus=Lus10005328.g ID=Lus10005328.BGIv1.0 annot-version=v1.0 MAPTTVDGGSPPRKKSSVRAPTNIYSLSHDTLCVLFSYLDLLDLVRCSTVCSSWNSIIKRSKLLQGLYLKQVRGGNISSRSSDSLDESMSVYLEELAMER HRRALMGGSAVINQWKGHSAGVDQCRMKMGMILTGVGDKVIRLWSSENLKCVEEYQIPDAVRLADFDFDETKVVGLFGTKVCIWRRNGKRSIFPSKEGTF SKGSCMRYFDPDAVVGCEDGTARVFDMYSRQCSRIIKMHPEAVSCLALSDDQLILSGSSLGRITVSGLLSNEKIATLRPTDTTGSSLVFCGTTAGYASCW DLRKMRRLWERRVSSNVVYSIHHLRNDTSALVVGGIDGVLRVIDQDTGEGISRYIMDHDSHPTSFRYPHGVGERRRGKCLPKGTLIDGVPRSARPPITCL AVGREKVVTTHNGTHVRLWKFKGRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	1.4	0.8582
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	3.2	0.7942
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	3.5	0.8221
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	7.5	0.7741
AT4G32910			unknown protein		Lus10011625 [exp]	8.1	0.8221
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	8.4	0.8379
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	15.5	0.7928
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	16.1	0.7757
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	16.3	0.7886
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	17.9	0.7806

Compare expression of checked genes

Lus10005328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.