Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13760 674 / 0 Plasma-membrane choline transporter family protein (.1) AT3G04440 206 / 4e-60 Plasma-membrane choline transporter family protein (.1) AT3G03700 206 / 4e-60 Plasma-membrane choline transporter family protein (.1) AT5G17830 142 / 7e-37 Plasma-membrane choline transporter family protein (.1) AT1G25500 99 / 7e-22 Plasma-membrane choline transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039585 [exp] 928 / 0 AT5G13760 719 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10041476 [exp] 116 / 2e-27 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10034295 [exp] 115 / 3e-27 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261900 [exp] 744 / 0 AT5G13760 640 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G056700 [exp] 731 / 0 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.019G040500 [exp] 229 / 4e-69 AT3G04440 422 / 6e-145 Plasma-membrane choline transporter family protein (.1) Potri.013G066100 [exp] 223 / 4e-67 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 124 / 2e-30 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 122 / 1e-29 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.009G056301 [exp] 0 / 1 AT5G13760 145 / 9e-40 Plasma-membrane choline transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10005331 pacid=23154598 polypeptide=Lus10005331 locus=Lus10005331.g ID=Lus10005331.BGIv1.0 annot-version=v1.0 ATGGGCGCCACAGAATCTGAGGTGGAGAGGGAGAGAGAAGAAGGAAATGAGGAAGAAGGAGGAAGAAGAGTGGCAGAAATAGATTTGGAGAAAGGAGAAG CTGGGAATATTACTAACAATGGCGGAGAAGGATTAGGTGGTGGAGGAGGTGAAGAACAACATGGGAGAGAGTTTCATATGTCAATGATGCAGAGGTTGAA TCCCACAAATCCTCTGAGGATCCACGTCATCAATCAAATTCCCACCAGAGCAGCAGCAGCAGCAGCAGCTACTCCTTCACCTGCCCAGCCTTCATTTCAG CCTCGCTCCACTCCCACCCCACAACAATCGATAATAACACTAAACTCAAGAAAGTACACCAACAAGATATCTCTGTTCCTGTTCTGCCTGCACATGGCTC TGGCAATTGTGCTAGTAGGATTTCTGATATTCAAGGGAGTTCAAGGACTAATTCTAGCATCAGATAGAGTGAAAAGGAAAGAGATGAGGATCTTGAAGTA TTTCCTACCACAGGTGGAAGCAGCATCGCTTCTGAGCATCACTTTGGCCTTCTCATGGCAGAAGGCATTTAGGGTGTGGCCTGGCTTCATGATTCATTTC ATAATGTGGTGTTCTTTCCTTATGTCCTTATCCGCTGGGATTCTCTTAATCTGCTTCCAGAAGGCTTCCACTGATGGGGTTGGGGTTTGCCTCATGGCTT TTGCAATTGGTAATGGCTTGTATGCTTGCTGGGTTACTCAAAGAATAGGTTTTTGCACAAAGGTGTTGGTTAAGTCCCTCGAACCCGTATCAAAATTCCC AGACTTGAATCAACCCACGTATTGGATGCTTGGCGTTGGCTTCTTGTGGATGTCTATGTGGATCGTTGCTGTTATTGGAGCCTTGAATTTCTACCTCCCA CCTTTGGTCATTATTGTGTTGGTGTTGAGCTTGGCTTGGACTGCTGAAGTCCAGAGGAATGTGGTTAATTTGACTGTCAGCAGGGTCATTTCTCTTTATT ACTTGAGAGGGATGCAATCCAGCACCAAGTTCTGCTTCCAAAGAGCTTTGACTAAGAACCTCGGGAGTGCTTGTCTCGGATCGTTATTTGTTCCAGCAAT CGAGGCGCTCAGAATTATTGCTCGAGGTCTGAACTTGCTAGAAGGAGAGGATGAGTTCATGTTCTCTTGTGCTCATTGTTGCCTCAATGTCATGCAATTC ATCTTCAGCTGTGGAAATGGTTGGGCATTTGTACAGATAGCTGCATATGGAAAAGGGTTTGTGAAGGCATCAAAGGACACTTGGTCACTGTTCCAGAGCC AAGAAATGGAAGAAATAGTTGATTCAGACATAACAAGCTCCATATGCTTCTTAACTGGAGTATGCAGTGGCTCAATCTGTGTGATCATGGTTGCTGCCTG GACTTTCAAAGTCCATCAGCCCTTTACTGCAACCCTCTCCCTTTTGGCATTCTTTATTGGCTATCTCATGACTAGGATTGCAATGGCATTGCCCCATGCA TGTGTGAGTTGTTACTATGTATGCTACGCAGAGAATCCTGACAACAGATTGTTTGATAAAACCATCAAAGACCGTCAGAGCTTGATCAAATCCGGTAGGG ATGTGGTTGTGCCAACGCCTCGAGTACCTCGTCGATTCACAACATGA
AA sequence Show only first row Show all	>Lus10005331 pacid=23154598 polypeptide=Lus10005331 locus=Lus10005331.g ID=Lus10005331.BGIv1.0 annot-version=v1.0 MGATESEVEREREEGNEEEGGRRVAEIDLEKGEAGNITNNGGEGLGGGGGEEQHGREFHMSMMQRLNPTNPLRIHVINQIPTRAAAAAAATPSPAQPSFQ PRSTPTPQQSIITLNSRKYTNKISLFLFCLHMALAIVLVGFLIFKGVQGLILASDRVKRKEMRILKYFLPQVEAASLLSITLAFSWQKAFRVWPGFMIHF IMWCSFLMSLSAGILLICFQKASTDGVGVCLMAFAIGNGLYACWVTQRIGFCTKVLVKSLEPVSKFPDLNQPTYWMLGVGFLWMSMWIVAVIGALNFYLP PLVIIVLVLSLAWTAEVQRNVVNLTVSRVISLYYLRGMQSSTKFCFQRALTKNLGSACLGSLFVPAIEALRIIARGLNLLEGEDEFMFSCAHCCLNVMQF IFSCGNGWAFVQIAAYGKGFVKASKDTWSLFQSQEMEEIVDSDITSSICFLTGVCSGSICVIMVAAWTFKVHQPFTATLSLLAFFIGYLMTRIAMALPHA CVSCYYVCYAENPDNRLFDKTIKDRQSLIKSGRDVVVPTPRVPRRFTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13760			Plasma-membrane choline transp...		Lus10005331 [exp]	0	1
AT1G19240			unknown protein		Lus10034891 [exp]	1.7	0.7889
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	6.6	0.7924
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	8.5	0.8071
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	16.7	0.7683
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	20.7	0.7717
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	28.6	0.7358
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	30.3	0.7797
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	31.7	0.7690
AT3G19650			cyclin-related (.1)		Lus10011420 [exp]	38.3	0.7407
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	44.4	0.7538

Compare expression of checked genes

Lus10005331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.