Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35630 677 / 0 PSAT phosphoserine aminotransferase (.1) AT2G17630 654 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039587 [exp] 854 / 0 AT4G35630 673 / 0.0 phosphoserine aminotransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099900 [exp] 702 / 0 AT4G35630 647 / 0.0 phosphoserine aminotransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10005333 pacid=23154620 polypeptide=Lus10005333 locus=Lus10005333.g ID=Lus10005333.BGIv1.0 annot-version=v1.0 ATGGCTTCAAAGCTCGCATCTCCCAACAACCTCCTCCTCCAATCCCCCCACCGCCACAACCAGAGCAGAGCAACCAACCACCTCCGCCCATCCGCCGCCT TCTCCCCCAAAATCAAGCCCTTCTCCGTACGATGTGCCACCACCAACACAGCATCCTCGCCAATCTCCACCGCCCATGCCGTAGATCCAGAGCGCGTCTT CAATTTCGCTGCCGGACCGGCTACCTTACCCGCCAACGTTCTCAAGAAGGCCGAATCGGAGCTCTACAACTGGCGCGGATCTGGGATGAGCGTCATGGAG ATGAGTCACAGGGGCAAAGAATTCATGTCCATCATCAACAAGGCCGAATCAGATCTCCGCGCCCTGTTGAACATTTCCGACGATTACTCCGTCCTCTTCC TCCAAGGTGGCGCCACCACTCAGTTCGCCGCCATCCCTCTCAACCTCTGCTCCCCGGAAGACGCCGTGGATTACGTCGTCAGCGGATCCTGGGGGGACAA GGCGTTCAAGGAGGCGCAGAAGTACTGTAAACCTAATCTGATCTGGTCAGGTAAGTCCGAAAAATACACTGCGATCCCTGCTTTCGATAGCCTTTCCCAG AGCGCCGACGCAAAGTATTTGCACATATGTGCGAACGAGACGATTCACGGGGTTGAGTTCAAGGATTACCCAACCCCTAAGAATGGGATCTTGATTGCGG ATATGTCTTCCAATTTCTGTTCTAAGCCAGTGGATGTCTCCAAATTCGGGATCATCTACGCTGGGGCTCAGAAGAACGTTGGGCCATCAGGGGTCACTAT TGTGATCATCAGGAAAGATCTGATTGGGAATGCTCAGGGGATTACTCCCGTGATGCTCGATTACAAGATCCACAGTGATAACAACTCGCTCTACAACACC CCTCCATGCTATGGGATTTACATGTGCGGGCTTGTTTTTGAGGATTTGCTGGCACAGGGCGGGCTAGAGGAGGTTGAGAAGAAGAACAAGAAGAAAGGGG ATTTGCTGTACAATGCTATTGAAGAGAGCAATGGGTTTTACAGGAACCCTGTGGAGAAGTCAGTGAGGTCGTTGATGAATGTGCCTTTCACGATGGAGAA GTCTGAGCTGGAAGCAGAGTTCGTCAAGGAGGCGGCAAAGGAGCAGATGGTGCAGCTCAAGGGGCACAGGTCAGTGGGAGGGATGAGGGCTAGCATCTAC AATGCAATGCCTTATCAAGGTGTGGAGAAGTTGGTTGCCTTTATGAAGGACTTCCAGGCAAAGCATGCTTGA
AA sequence Show only first row Show all	>Lus10005333 pacid=23154620 polypeptide=Lus10005333 locus=Lus10005333.g ID=Lus10005333.BGIv1.0 annot-version=v1.0 MASKLASPNNLLLQSPHRHNQSRATNHLRPSAAFSPKIKPFSVRCATTNTASSPISTAHAVDPERVFNFAAGPATLPANVLKKAESELYNWRGSGMSVME MSHRGKEFMSIINKAESDLRALLNISDDYSVLFLQGGATTQFAAIPLNLCSPEDAVDYVVSGSWGDKAFKEAQKYCKPNLIWSGKSEKYTAIPAFDSLSQ SADAKYLHICANETIHGVEFKDYPTPKNGILIADMSSNFCSKPVDVSKFGIIYAGAQKNVGPSGVTIVIIRKDLIGNAQGITPVMLDYKIHSDNNSLYNT PPCYGIYMCGLVFEDLLAQGGLEEVEKKNKKKGDLLYNAIEESNGFYRNPVEKSVRSLMNVPFTMEKSELEAEFVKEAAKEQMVQLKGHRSVGGMRASIY NAMPYQGVEKLVAFMKDFQAKHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	0	1
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	1.4	0.9447
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	1.7	0.9356
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	2.8	0.9398
AT2G16800			high-affinity nickel-transport...		Lus10027851 [exp]	3.6	0.9157
AT3G25545			unknown protein		Lus10013064 [exp]	5.5	0.9181
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	6.9	0.9354
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	7.0	0.9320
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	7.1	0.9326
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10009602 [exp]	7.2	0.8958
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	9.2	0.9168

Compare expression of checked genes

Lus10005333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.