Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63490 467 / 6e-166 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) AT2G42710 160 / 2e-45 Ribosomal protein L1p/L10e family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039589 [exp] 671 / 0 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10036988 [exp] 110 / 1e-26 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10015809 [exp] 100 / 7e-25 AT2G42710 227 / 2e-73 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 86 / 9e-18 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004691 [exp] 54 / 3e-08 AT2G42710 147 / 5e-42 Ribosomal protein L1p/L10e family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262400 [exp] 517 / 0 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.009G057100 [exp] 501 / 3e-179 AT3G63490 427 / 3e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.014G143000 [exp] 164 / 9e-47 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10005337 pacid=23154597 polypeptide=Lus10005337 locus=Lus10005337.g ID=Lus10005337.BGIv1.0 annot-version=v1.0 ATGGCGGCAACATGTAGCACAACGTCATCCCTAATGTTAACATACGCCCCTTCCACAGCTCACCCTCAAGATCTCACTCAATCCCTTATCCATTTCAAGC CAAAGGCTCTATCTTTCTCCCCCTTGTTGTCGGGTGAGAGGAAATCGGGCAAATGGTTCAATTTCGATTGCCGCAGAGATACCAAGTTTGGAGCTTTCCG GGTGGAGGTGTCTGCAGTGGCCACTCAGGCAGAGGTGGAGGAGGATGAGGATGAGGATGAGGATGACGAGGATGATGAGGAGGATGAGGAAAGAGAGAGG AAGCGTGCTCTGGCAGCTGCTAATGCCGTTCCTACTAAACCCAAAACTGGCAAGGCTGCATTGCCTTTGAAGAGAGACAGGACAAGATCTAAAAGATTCT TGGAAATTCAAAAATTGAGGGAGATAAAAAAGGAGTACGATGTGACAACAGCGATATCTTTGATGAAGCAAATGACCAACACAAAATTCGTTGAAACAGT TGAAGCTCATTTCCGTCTTAACATCGACCCAAAATACAATGACCAACAGCTAAGGGCAACGGTAAACTTACCGAAAGGAACTGGACAGCCTGTGAAAGTT GCTGTCCTTACACAAGGTGAGAAGTTCGATGAAGCAAAAGGTGCAGGAGCAGATTTGGTTGGTGGAGAGGATCTGATCGAGCAAATTAAAGGAGGGTTCA TGGAATTTGACAAGTTGATAGCATCTCCAGACATGATGCCTAAGGTTGCTAGCCTTGGTAAGATCCTGGGACCAAGAGGACTCATGCCAAATCCAAAAGC CGGCACTGTTAGCACCAACATACCTCAGGCAATAGCTGAATTCAAGAAGGGAAAGGTGGAATACAGAGCAGATAAAACTGGGATTGTTCACATACCGTTT GGAAAAGCAAACTTCAGCGAAGATGACCTCATCGTTAACTTAGTCTCTGCCATTAAATCAGTAGAAAGTAACAGGCCGAAGGGAGCGAAAGGAGTATACT GGAAGAGTGCATACATATGCTCATCAATGGGTCCTTCCCTCAAACTAAACATCCGGGACATGCTTGATTTGAAGCTTCCATCAAACGTCTGA
AA sequence Show only first row Show all	>Lus10005337 pacid=23154597 polypeptide=Lus10005337 locus=Lus10005337.g ID=Lus10005337.BGIv1.0 annot-version=v1.0 MAATCSTTSSLMLTYAPSTAHPQDLTQSLIHFKPKALSFSPLLSGERKSGKWFNFDCRRDTKFGAFRVEVSAVATQAEVEEDEDEDEDDEDDEEDEERER KRALAAANAVPTKPKTGKAALPLKRDRTRSKRFLEIQKLREIKKEYDVTTAISLMKQMTNTKFVETVEAHFRLNIDPKYNDQQLRATVNLPKGTGQPVKV AVLTQGEKFDEAKGAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVSTNIPQAIAEFKKGKVEYRADKTGIVHIPF GKANFSEDDLIVNLVSAIKSVESNRPKGAKGVYWKSAYICSSMGPSLKLNIRDMLDLKLPSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10005337 [exp]	0	1
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10039589 [exp]	1.0	0.9755
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10006116 [exp]	2.8	0.9406
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029752 [exp]	6.5	0.9335
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	8.0	0.9264
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	9.6	0.9323
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	11.2	0.9309
AT1G32470			Single hybrid motif superfamil...		Lus10030979 [exp]	18.4	0.9236
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10011151 [exp]	18.5	0.9297
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	19.4	0.9130
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	19.7	0.9145

Compare expression of checked genes

Lus10005337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.