Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25170 1730 / 0 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 1134 / 0 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G13370 567 / 3e-175 CHR5 chromatin remodeling 5 (.1) AT5G44800 546 / 8e-165 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT5G18620 421 / 4e-127 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 419 / 2e-126 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G19310 380 / 2e-112 Homeotic gene regulator (.1) AT3G06010 379 / 1e-111 ATCHR12 Homeotic gene regulator (.1) AT2G44980 340 / 4e-100 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G66750 332 / 6e-98 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041019 [exp] 2715 / 0 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10022423 [exp] 547 / 2e-167 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10038363 [exp] 552 / 2e-166 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10009711 [exp] 538 / 2e-165 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10036223 [exp] 536 / 2e-162 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10033967 [exp] 420 / 3e-122 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 378 / 3e-111 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 372 / 4e-109 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 359 / 4e-107 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262200 [exp] 1990 / 0 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 1988 / 0 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.003G110100 [exp] 571 / 4e-173 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G253400 [exp] 562 / 8e-173 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.001G123400 [exp] 565 / 3e-171 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.009G047800 [exp] 550 / 8e-169 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.010G021400 [exp] 426 / 5e-129 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 423 / 6e-128 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G149900 [exp] 364 / 3e-106 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.007G026700 [exp] 354 / 7e-106 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] PF06461 [flax] [poplar] DUF1086 Domain of Unknown Function (DUF1086) CL0023 [flax] [poplar] PF06465 [flax] [poplar] DUF1087 Domain of Unknown Function (DUF1087)
Representative CDS sequence Show only first row Show all	>Lus10005339 pacid=23154619 polypeptide=Lus10005339 locus=Lus10005339.g ID=Lus10005339.BGIv1.0 annot-version=v1.0 ATGAGTAGCTTGGTTGAGAGGCTTAGAGTCCGATCTGATCGAAGGCCGATATATAACCTTGATGAATCAGACGATGAGGATTTTCTGTCCCGTAAAGCTG GGAAATCAGCAGAAAATGCAGAGAGAATAGTCCGACCTGATGCGAAAGATAACCTGTGTCAAGCATGTGGAGAAAGTGGCGAGCTTGTGAACTGTGAAAC CTGCACTTATGCCTATCATGCGAAGTGTCTGCTTCCACCACTAAAAGCTCCTCCTTCCAGCAGCTGGAGCTGTCCTGAATGTGTTAGTCCTCTAAATGAT ATTGAGAAGATATTGGACTGTGAAATGCGTCCAACTGCAGCTGATGATAGTGATGCATCTACACTGGGCTCAAAGCAAATTTTCGTTAAGCAATATCTGG TGAAGTGGAAGCGGTTATCATATCTTCACTGCACTTGGGTCCCTGAGAAAGAGTTCGTGAAAGCATTTAAGTCAAACCCCCGTCTTAGGACTAAATTAAG CAACTTCCATAGACAAGGTACCTCAACCAATTCTGAGGATGAACCTGCAATCAGGCCAGAATGGACAACAGTTGATAGAATCCTTGCTTGCAGGGGTGAG GATGATGAAAAGGAATATCTTGTGAAGTATAAGGAACTTCCTTATGATGAATGTTACTGGGAATTTGAAACAGATATATCAGCATTTCAGCCAGAAATAG AGAAGTTTAATATAATTCAGTTAAGGTCCCACCGGTTAAAAAAGCAAAAGAGTTTCCGTGATGCTCCTGATTCCAAGAAGAATTTGAAAGAATTCCAACA GATTGAGCAAAGCCCTGAGTTTATCTCAGGAGGCTCATTGCATCCATATCAACTAGAAGGGTTAAACTTCCTGCGGTTTTCTTTTTCCAAGCAAACACAT GTCATACTTGCCGATGAAATGGGTTTGGGGAAAACAATACAAAGTATTGCTTTTTTAGCATCTCTGTTTGAAGAGAACTTGTACCCCCATTTAGTGATTG CCCCGCTTTCAACATTGAGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAACTGAATGTCGTTATGTATGTTGGTTCTGCTCAAGGTCGTGCTGT CATTAGGGAATATGAATTTTACTACCCTAAAAATCACAAGAAGATGAAGAAAAAGAAATCTGGTCAACTTGTTAGTGAAAGCAAGCAAGATAGGATAAAG TTTGATGTGCTCTTGACTTCCTATGAGATGGTTAACATGGATACAGCATCCTTAAAGCCCATTAAATGGGAGTGCATGATTGTTGACGAAGGTCATCGCC TGAAAAACAAGGATTCAAAACTTTTTCTTTCTCTGAAGCAATATTCCAGTAATCACCGTGTGCTTTTGACGGGGACCCCTCTTCAGAATAATCTTGATGA GCTATTCATGCTCATGCACTTCCTTGATGCTGGAAAGTTTTCAAGTTTGGAGGAGTTTCAAGAAGAGTTCAAGGATATAAATCAGGAGGAACAGATTTCT CGGCTTCATAAAATGTTGGCTCCCCATCTCCTTAGAAGGGTGAAAAAGGATGTTATGACAGAATTGCCTCCTAAAAAGGAGCTCATTCTACGTGTTGATC TAAGCAGCTTGCAAAAAGAATATTACAAGGCAATTCTAACTCGTAATTACCAAATTTTAACACGGCGTGGTGGTCCACAGATTTCACTTATCAACGTTGT TATGGAATTGCGGAAGCTCTGCTGTCATCCGTATATGTTAGAAGGAGTTGAGCCAGCAATAGACGATCCAACAGAATCTTTCAAACAATTTGTGGAGTCG TCTGGAAAGTTGCAAGTGCTTGACAAAATGATGGTGAAACTGAAAGAGCAAGGCCATAGAGTTCTTATTTATTCTCAGTTTCAGCACATGCTGGACTTAC TTGAGGATTACTGCGTCTACAAGAAATGGCAATACGAACGAATTGATGGGAAAGTTGGTGGAGCTGATAGACAAATTCGCATTGATCGGTTTAATTCAAA AAATTCGTCCAGATTCTGTTTCCTTCTCTCTACTAGGGCTGGAGGACTGGGTATAAACCTTGCAACTGCTGATACAGTCATCATATATGACAGTGATTGG AATCCGCATGCTGACCTCCAGGCTATGGCTAGGGCTCATCGACTTGGCCAAACTAACAAGGTCATGATATATAGGCTTATAACACGAGGAAGTATTGAGG AGCGCATGATGCAATTGACTAAGAAGAAAATGGTATTAGAACATCTTGTTGTTGGGAGGCTGAAGGCTCAAAATATAAACCAGGAAGAGTTGGATGACAT TATCAGGTATGGCTCAAAGGAGCTATTTGCTGATGAGAATGATGAATTGGGAAAGTCTCGTCAAATTCATTATGATGATGGTGCAATCAACCGATTACTG GACCGTGAACAAATTGGAGATGAAGAGGCAACATTGGACGATGAAGAAGAAAATGGATTTCTAAAGGCATTTAAGGTTGCAAACTTTGAGTATATTGATG AAAAGGCGGAGGAAGAAGCTCCAAAACCTGAGTTGGAGACGATGAGCAATTCAGAGAAATTAAATTTCTGGGAGGAGCTGTTAAGAGATAAATTTGAAGA GCAAAAGGGCGAGGAGTCGAAATCTCTTGGAAAGGGAAAAAGAAGCCGCAAACAGATGGTGTCTGTTGAAGATGATGACCTTGCTGGTATGGAGGATTTA AGCTCTGATGGAGAGGATGACAATTATGAAGCAGACTTAACTGATGGAGAAACTTCGTCGGGAACTCAGGCTGGGAGAAGACCTTACAGAAAGAGAGCTC GGGACAATTCTGAACCCATTCCTTTAATGGAAGGAGAAGGAAAGTCCTTCAAAGTACTTGGTTTCAATCAGAACCAGAGGGCTCTTTTTGTTCAGATAAT GATGAGGTTTGGAATTGGGGACGAAAACTGGAAACAGTTTGTACCTCGCATGAAACAGAAGACTCTCGAGGAAATCCACAATTATGGGAAGATGTTCTTC AGACATGTTATTGAAGAAATAAACGACTTACCACACTTCTCTGACGGTGTTCCTAAAGAAGGACTTCGAATAGCAGACGTATTGGTCAGAATTGCATCGT TGAATATAATGAGGCAAAAGGTGAAGCTTGTCTCAGAAAATCCAACCATGCCACTTTTTGAGGAGGACGTTTATCCACGCTTGCCAGGACTCAAAGGTGG GAAATTTTGGACCGAAGAACATGATAAAAATTTACTCAAGGCAGTGATCAAGCAAGGCTATGGCCGTTGGCAAGCTATTCTTGATGACAAGGACGTGAAA ATCCAGGAAGTTGTATCCCAAGAGCTGAATCTCCCCGTTATGAATCTCCCTACCCCTGGGCAAATTTTGTCTCAAGCACAAAACGGTAGTTCTGGGATTA CTGAAGGTCCAAGCACCCAGCAGGCCTCAGTAAATGCTACCGGGAACGAGATTGGCACCAATGCTGCCCAGGGTATACCTCAAGGGCAATCTTACCAAGA ATCCATCCTGTACCATCTTAGAGATATGCAGAGGCGAATGGTTGAATTTGTTAAGAAGAGGGTGCTACTTCTTGAGCGGGGGATGAATGTTGAAGTCCAG AAAGAATACTATGCCAACCTAGATACTAAGCCAATAGTTAAAGAGCCTAATTGTGAAAGAAAGGGCACAGATCATTCAGCTTCAGTTTCGTTAGAGGCAG AGTCTGAAAAGATTAATCAACTGCCGCCGATGGAAGAAATCACATCTGAAGATACTGTTGCTGCTGGTTGTGTTGCTGACCCAGATCGATTAGAACTGGT CGAGCTTCACAATAAGATGTGCAAGAGTGTTGAGAACATTGCTCCTAATTTGCTTACGACATCCTCAAGGAGCCAAATTACAAGTTTCGAACTGAAACAG AAACTTCAACCATTGGAGACCATCTGCGAGCGTATGAATAGTGTGCTCTCGCCTTCTGAGCAGCCATTGCAAGATGTGGAGCAAAAAGGAGGCGCTGAGC CACCCAGAAGTCTAGATGAATCGTGCTGTACATCACTCGAACATAACGAACATGCTCTTCCTACAGTTGCTCAGGACAGTGTAGCAAAGATGGAGTTTGA AATCGGCAGTTTGTTTGGGATGCCGGACACGATTGATGTGGAAATGGAAGATAAATGGAAGGATGGTGCCCCTGCCGCAGATGATGATTTAACTAACAAT GGCGGGCACCCGTGA
AA sequence Show only first row Show all	>Lus10005339 pacid=23154619 polypeptide=Lus10005339 locus=Lus10005339.g ID=Lus10005339.BGIv1.0 annot-version=v1.0 MSSLVERLRVRSDRRPIYNLDESDDEDFLSRKAGKSAENAERIVRPDAKDNLCQACGESGELVNCETCTYAYHAKCLLPPLKAPPSSSWSCPECVSPLND IEKILDCEMRPTAADDSDASTLGSKQIFVKQYLVKWKRLSYLHCTWVPEKEFVKAFKSNPRLRTKLSNFHRQGTSTNSEDEPAIRPEWTTVDRILACRGE DDEKEYLVKYKELPYDECYWEFETDISAFQPEIEKFNIIQLRSHRLKKQKSFRDAPDSKKNLKEFQQIEQSPEFISGGSLHPYQLEGLNFLRFSFSKQTH VILADEMGLGKTIQSIAFLASLFEENLYPHLVIAPLSTLRNWEREFATWAPQLNVVMYVGSAQGRAVIREYEFYYPKNHKKMKKKKSGQLVSESKQDRIK FDVLLTSYEMVNMDTASLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYSSNHRVLLTGTPLQNNLDELFMLMHFLDAGKFSSLEEFQEEFKDINQEEQIS RLHKMLAPHLLRRVKKDVMTELPPKKELILRVDLSSLQKEYYKAILTRNYQILTRRGGPQISLINVVMELRKLCCHPYMLEGVEPAIDDPTESFKQFVES SGKLQVLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCVYKKWQYERIDGKVGGADRQIRIDRFNSKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW NPHADLQAMARAHRLGQTNKVMIYRLITRGSIEERMMQLTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDELGKSRQIHYDDGAINRLL DREQIGDEEATLDDEEENGFLKAFKVANFEYIDEKAEEEAPKPELETMSNSEKLNFWEELLRDKFEEQKGEESKSLGKGKRSRKQMVSVEDDDLAGMEDL SSDGEDDNYEADLTDGETSSGTQAGRRPYRKRARDNSEPIPLMEGEGKSFKVLGFNQNQRALFVQIMMRFGIGDENWKQFVPRMKQKTLEEIHNYGKMFF RHVIEEINDLPHFSDGVPKEGLRIADVLVRIASLNIMRQKVKLVSENPTMPLFEEDVYPRLPGLKGGKFWTEEHDKNLLKAVIKQGYGRWQAILDDKDVK IQEVVSQELNLPVMNLPTPGQILSQAQNGSSGITEGPSTQQASVNATGNEIGTNAAQGIPQGQSYQESILYHLRDMQRRMVEFVKKRVLLLERGMNVEVQ KEYYANLDTKPIVKEPNCERKGTDHSASVSLEAESEKINQLPPMEEITSEDTVAAGCVADPDRLELVELHNKMCKSVENIAPNLLTTSSRSQITSFELKQ KLQPLETICERMNSVLSPSEQPLQDVEQKGGAEPPRSLDESCCTSLEHNEHALPTVAQDSVAKMEFEIGSLFGMPDTIDVEMEDKWKDGAPAADDDLTNN GGHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	1.0	0.9180
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	2.0	0.9079
AT3G46220			unknown protein		Lus10040874 [exp]	2.0	0.8852
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	3.9	0.8986
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	4.7	0.8610
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	5.3	0.8562
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10021991 [exp]	5.4	0.8249
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	5.5	0.8695
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	6.3	0.8754
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	6.3	0.8365

Compare expression of checked genes

Lus10005339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.