Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25170 301 / 4e-105 PPPDE putative thiol peptidase family protein (.1) AT2G25190 265 / 3e-90 PPPDE putative thiol peptidase family protein (.1) AT4G31980 265 / 5e-85 unknown protein AT1G80690 247 / 2e-83 PPPDE putative thiol peptidase family protein (.1) AT1G47740 223 / 3e-73 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 214 / 2e-70 PPPDE putative thiol peptidase family protein (.1) AT4G17486 209 / 8e-69 PPPDE putative thiol peptidase family protein (.1.2) AT4G25680 90 / 8e-22 PPPDE putative thiol peptidase family protein (.1) AT4G25660 89 / 3e-21 PPPDE putative thiol peptidase family protein (.1) AT3G07090 67 / 2e-13 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041021 [exp] 372 / 2e-133 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 329 / 5e-116 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 321 / 4e-113 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10042454 [exp] 238 / 2e-79 AT1G80690 265 / 1e-89 PPPDE putative thiol peptidase family protein (.1) Lus10026215 [exp] 236 / 1e-78 AT1G80690 265 / 8e-90 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 228 / 1e-75 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 224 / 3e-74 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10040485 [exp] 223 / 1e-73 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10011291 [exp] 220 / 1e-72 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261500 [exp] 319 / 6e-112 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 305 / 3e-106 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 270 / 1e-92 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 265 / 1e-90 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 233 / 2e-77 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 232 / 2e-77 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 231 / 6e-77 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 228 / 2e-75 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 227 / 3e-75 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 211 / 2e-69 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10005341 pacid=23154624 polypeptide=Lus10005341 locus=Lus10005341.g ID=Lus10005341.BGIv1.0 annot-version=v1.0 ATGTGGTGTCGGATGATCCTGCTGCACCCGAAGAAGAAGACTGGTTCTGTACCGGTTTACTTGAATGTTTATGATTTGACTCCGATGAATGGCTACGCAT ACTGGTTTGGCCTCGGAATTTACCATTCCGGTGTCCAAGTTCATGGGGTGGAGTATGGTTATGGAGCTCATGACCACTCAACAACGGGGATATTTGAGGT GGAACCTAGGCAGTGCCCTGGTTTCACTTTCAGGAAGTCAATACTAATTGGAAGGACTGATCTTGGTCCCAAGGAAGTTCGTTCCATGATGGAGAAACTG TCCCAAGAGTATTCTGGGAATACCTATCATCTTATCACTAAGAACTGCAATCACTTCTGCAACGATGTGTCTCTCAAGTTAACAGGGAAAACAATCCCCA ACTGGGTTAACCGACTTGCTCGTTTAGGTTTTCTTTGCAACTGTGTGCTGCCAGCTGAGCTGAATGGAGCGAAAGTAAGATCAGAAGAGAGGATGCAGCA TGTAGAGAAGAAGAAATTAAGGAGCCGTTCAAGTAGATTTGTATCTGCAACTACACCATCATTATCAACAAGTGGTTCTGGTTTGGAAACCAGAAGTGGT AGGCCCTTAAGAACTAAATGA
AA sequence Show only first row Show all	>Lus10005341 pacid=23154624 polypeptide=Lus10005341 locus=Lus10005341.g ID=Lus10005341.BGIv1.0 annot-version=v1.0 MWCRMILLHPKKKTGSVPVYLNVYDLTPMNGYAYWFGLGIYHSGVQVHGVEYGYGAHDHSTTGIFEVEPRQCPGFTFRKSILIGRTDLGPKEVRSMMEKL SQEYSGNTYHLITKNCNHFCNDVSLKLTGKTIPNWVNRLARLGFLCNCVLPAELNGAKVRSEERMQHVEKKKLRSRSSRFVSATTPSLSTSGSGLETRSG RPLRTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	3.7	0.7782
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	9.9	0.7774
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10035734 [exp]	10.0	0.7815
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	12.0	0.7640
AT5G17510			unknown protein		Lus10024979 [exp]	15.8	0.7326
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	17.7	0.7329
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10037721 [exp]	18.4	0.7323
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	19.0	0.7734
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	19.3	0.7533
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	19.7	0.7515

Compare expression of checked genes

Lus10005341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.