Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11000 144 / 2e-41 Plant protein of unknown function (DUF868) (.1) AT2G25200 101 / 2e-25 Plant protein of unknown function (DUF868) (.1) AT3G04860 86 / 4e-20 Plant protein of unknown function (DUF868) (.1) AT5G28150 86 / 6e-20 Plant protein of unknown function (DUF868) (.1) AT4G12690 82 / 1e-18 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT2G04220 80 / 6e-18 Plant protein of unknown function (DUF868) (.1) AT2G27770 80 / 1e-17 Plant protein of unknown function (DUF868) (.1) AT5G48270 69 / 9e-14 Plant protein of unknown function (DUF868) (.1) AT3G13229 68 / 1e-13 Plant protein of unknown function (DUF868) (.1) AT2G36470 55 / 5e-09 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041022 [exp] 285 / 1e-98 AT5G11000 159 / 4e-47 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 136 / 1e-38 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 92 / 4e-22 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 91 / 9e-22 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 91 / 1e-21 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 82 / 3e-18 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 74 / 1e-15 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 74 / 1e-15 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 74 / 2e-15 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021800 [exp] 185 / 6e-57 AT5G11000 278 / 2e-90 Plant protein of unknown function (DUF868) (.1) Potri.006G261300 [exp] 181 / 2e-55 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 96 / 9e-24 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 95 / 2e-23 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 94 / 6e-23 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.013G036400 [exp] 92 / 4e-22 AT3G04860 137 / 3e-38 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 88 / 7e-21 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 85 / 1e-19 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 82 / 9e-19 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 78 / 5e-17 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10005342 pacid=23154613 polypeptide=Lus10005342 locus=Lus10005342.g ID=Lus10005342.BGIv1.0 annot-version=v1.0 ATGGTTCTGAGAAGGGAGCAGGTGTTTGGAAACAGGGTTTACACCACCAAGGCCAGATTCGGCGGCGCCAATCATCAGATTTCCATCGACTGTAGCACCG GGAGTGACGCCAGGCTGAGTTTCTCGATGGATAATAAGAGGATCCTGCAAATTAAGAGGCTGAAGTGGAAGTTCAGAGGGAACGAGCGAGTCGAGGTCGG TGGAGTTCCGATTCAGATCTCCTGGGACGTCTACAATTGGCTGTTCGAGGATGGTGGCGGGGATGCACACGCAGTGTTCATGTTCAGGTTCGAAAAAGCG GAAGAAGAAGAAGAAGACGAGTGTGATTACGACGGAGGAGCGGCGGCGGAGAAGAGTAGAGCAGTGGTGCCGTGGCGGCCGCAGGAGGAGCGCCATCATC AGAGTAATTCACCTTCGTGGGGAGGAATAGGGATGATGTTGAGGAAGGGGTTGCTGATGAAGAGGGCGGGGGCAAGGAGTTCGTCGTGGTCGTCGATATC AATGTCGTCGGCGTCGTCGATGGGGACGAATTCATCGGTGATGGAGTGGGCCAGCGTGGAAGAGAGCGAGTTGAGTAGTGGGCCTACTGGCTTCTCTTTG CTGGTTTATGCCTGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10005342 pacid=23154613 polypeptide=Lus10005342 locus=Lus10005342.g ID=Lus10005342.BGIv1.0 annot-version=v1.0 MVLRREQVFGNRVYTTKARFGGANHQISIDCSTGSDARLSFSMDNKRILQIKRLKWKFRGNERVEVGGVPIQISWDVYNWLFEDGGGDAHAVFMFRFEKA EEEEEDECDYDGGAAAEKSRAVVPWRPQEERHHQSNSPSWGGIGMMLRKGLLMKRAGARSSSWSSISMSSASSMGTNSSVMEWASVEESELSSGPTGFSL LVYAWKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	0	1
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	1.0	0.8694
AT1G57680			unknown protein		Lus10028891 [exp]	2.4	0.7841
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	6.2	0.7569
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	6.3	0.7799
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	7.6	0.7858
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	8.7	0.7779
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	11.5	0.7675
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	12.3	0.7669
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	14.0	0.7523
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	21.4	0.7608

Compare expression of checked genes

Lus10005342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.