Plant FIBer expression Database

Lus10005344 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25250 45 / 3e-06 unknown protein
AT4G32020 42 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041025
[exp]
240 / 3e-82 AT2G25250 60 / 8e-12 unknown protein
Lus10001940
[exp]
104 / 1e-28 AT4G32020 62 / 1e-12 unknown protein
Lus10001936
[exp]
93 / 3e-24 AT4G32020 57 / 2e-10 unknown protein
Lus10019069
[exp]
54 / 3e-09 AT4G02040 64 / 8e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G260000
[exp]
73 / 2e-16 AT4G32020 47 / 1e-06 unknown protein
Potri.018G022400
[exp]
67 / 3e-14 AT4G32020 62 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10005344 pacid=23154601 polypeptide=Lus10005344 locus=Lus10005344.g ID=Lus10005344.BGIv1.0 annot-version=v1.0
ATGGGAACCGCCGTTCTCAATCCCCAAGACTGCCTCCGTGATGCTTTTCTCCCTTCTGGCCGCCTCCTATCCGCGCAACTACCTCCCTCCAAAATGCCCA
CCCCAAACCGCTCCTCCAGGCACAATCGTGCTCAATCCAACCGCAGAAAGCGGAGCCCTAATTCCGATGCTTCTTCACTCTCTCCCCAGACTCGACTCAA
TAATAACCTCGTTATGGGCCAGGTCAAGATTCTCAAGCGAGGAGAAGAAATTCAGATTCCGACGAAGAAGAAGGAGTTGGCCAAGCCTGCCAATAACCAC
CGCAGGGTGGTGGATGTAACCGAAACTCACCCCGTTACTCCTCCTCCTCCTGCTCCTGCTCCTCAGCTGAACGGATCTGTGGTCGGGTTCTACGCCGGAT
CTGGATTTTTCACCTCGCCGCCTCCAAGCTCTTTGCCTCTTCCGGTGTTTCTGAAGAAGAGTGTTGACATGGAGGCTACTAGCGATCTGTGCAGGCTTCT
GAACCTGGTTTTGTAG
AA sequence
>Lus10005344 pacid=23154601 polypeptide=Lus10005344 locus=Lus10005344.g ID=Lus10005344.BGIv1.0 annot-version=v1.0
MGTAVLNPQDCLRDAFLPSGRLLSAQLPPSKMPTPNRSSRHNRAQSNRRKRSPNSDASSLSPQTRLNNNLVMGQVKILKRGEEIQIPTKKKELAKPANNH
RRVVDVTETHPVTPPPPAPAPQLNGSVVGFYAGSGFFTSPPPSSLPLPVFLKKSVDMEATSDLCRLLNLVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32020 unknown protein Lus10005344
[exp]
0 1
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Lus10025819
[exp]
1.4 0.9461
AT4G22560 unknown protein Lus10028927
[exp]
2.8 0.9435
AT4G33565 RING/U-box superfamily protein... Lus10012745
[exp]
3.2 0.9183
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10014132
[exp]
4.6 0.9204
AT1G02816 Protein of unknown function, D... Lus10009854
[exp]
4.7 0.9168
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023213
[exp]
5.1 0.9125
AT1G71740 unknown protein Lus10041497
[exp]
5.2 0.9197
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Lus10025818
[exp]
5.3 0.9268
AT5G47120 ATBI-1, ATBI1 ARABIDOPSIS BAX INHIBITOR 1, B... Lus10000589
[exp]
5.5 0.9086
AT5G58375 Methyltransferase-related prot... Lus10008585
[exp]
5.5 0.9224

Lus10005344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.