Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25220 404 / 4e-138 Protein kinase superfamily protein (.1.2) AT4G32000 384 / 3e-130 Protein kinase superfamily protein (.1.2) AT5G11020 327 / 5e-108 Protein kinase superfamily protein (.1) AT1G80640 296 / 6e-96 Protein kinase superfamily protein (.1.2) AT3G58690 243 / 8e-76 Protein kinase superfamily protein (.1) AT1G54820 244 / 1e-75 Protein kinase superfamily protein (.1) AT3G20530 214 / 5e-65 Protein kinase superfamily protein (.1) AT2G30730 204 / 1e-61 Protein kinase superfamily protein (.1) AT2G30740 201 / 3e-60 Protein kinase superfamily protein (.1) AT1G06700 200 / 1e-59 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001937 [exp] 560 / 0 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 413 / 1e-141 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 300 / 3e-97 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 298 / 3e-97 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10033606 [exp] 237 / 2e-73 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 234 / 2e-72 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10037526 [exp] 237 / 2e-70 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10004461 [exp] 233 / 2e-70 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10029948 [exp] 229 / 2e-69 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022300 [exp] 457 / 2e-158 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.006G260100 [exp] 399 / 6e-136 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.001G048500 [exp] 378 / 2e-127 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 339 / 6e-113 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 255 / 1e-80 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 248 / 3e-77 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 243 / 2e-75 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 220 / 1e-63 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.017G036300 [exp] 209 / 8e-63 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.014G119100 [exp] 214 / 6e-62 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10005345 pacid=23154605 polypeptide=Lus10005345 locus=Lus10005345.g ID=Lus10005345.BGIv1.0 annot-version=v1.0 ATGAAGCAACCGTCATTGTCTTCTCTTCTTCCCCCGGTTCCCCAGCCTGCTCTATCTACTACTTCCATGGCTGCTTTCTCTCCAGGAATTCAATTGCAGC TGGCCGGGAATGATGGACAGCACAAGGAGTTGGACAAGAAAACCCACCTCGTACTCGCTGTTGCTTGCATTGTCATGGCTGTCATTATCCTTCTCTTTGC ATCTGCTTGTTTCATTTTTTACTGCAAGCTCCTCCACAAGAGAAGAAGAAGAAACACCAAAAACCCAGATGTAGAGAAAGGGATATTATTGTTCAGCAAA TTCAGTTCCTTGAGGAGGATGCCTAGCAGCAAGAAATCTGTTCCATTAATCGACTACAAGGCGCTAGAGAAAGGCACTGAGAATTTCATGGAGGAGAATC TGTTGGGCAGGGGTGGATTTGGGCTTGTTTACAAAGCTACTATGGATGACAACTCTGTAGTCGCCTTGCTGTGTATATTGCAGAATGAGGTGGGCTTGTT GTGCAAATTTCAGCACCCAAACATCATTTCCATGGTTGGTTATGGCGTTCATGAGAACATGGGATTCATTGTCTACGAATTGATGCCTAATGGCTCACTC GAAGATCTTCTTCATGGAATTCAATTGCAGCTGGCCGGGAATGATGGACAGCACAAGGAGTTGGACAAGAAAACCCACCTCGTACTCGCTGTTGCTTGCA TTGTCATGGCTGTCATTATCCTTCTCTTTGCATCTGCTTGTTTCATTTTTTACTGCAAGCTCCTCCACAAGAGAAGAAGAAGAAACACCAAAAACCCAGG GCCATCTCGTGGGTCTAAGTTAACATGGCATATGCGTCTGAAAATTGCCCTGGATACAGCAAGAGGATTAGAGTATTTGCATGAATTCTGCAAGCCAGCA GTCATCCATAGAGATCTGAAATCCTCCAATATCCTTCTGGATTCCAATTTTCATGCTAAGCTCTCGGATTTCGGACTAGCCGTGGCTGATAACACTCACA ACAAGAGCAAGCTTAAGCTTTCGGGGACAGTTGGCTATGTTGCACCTGAGTACCTGCTTGATGGTGAGTTGACTGAGAAAAGTGATGTATATGCGTTTGG GATAGTGCTGCTGGAGCTTCTATTGGGAAGAAGGCCAGTTGAGAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCTAAGCTGACT AATAGAGAAATGCTCCCAAACATTGTGGATCCAGTGATTAAAGACAGAATTGATGACAAATACTTGTTCCAGGTAGCTGCGGTGGCTATGCTATGTGTGC AACCAGAACCTTCTTACAGGCCGCTCATAACCGACGTGGTACACTCTCTGATTCCTCTGCTTCCGGTTGAAATGGGAGGGACTCTAAGGACCATGTCGAT AAGTGGGGTTGTTGATGATGATTAA
AA sequence Show only first row Show all	>Lus10005345 pacid=23154605 polypeptide=Lus10005345 locus=Lus10005345.g ID=Lus10005345.BGIv1.0 annot-version=v1.0 MKQPSLSSLLPPVPQPALSTTSMAAFSPGIQLQLAGNDGQHKELDKKTHLVLAVACIVMAVIILLFASACFIFYCKLLHKRRRRNTKNPDVEKGILLFSK FSSLRRMPSSKKSVPLIDYKALEKGTENFMEENLLGRGGFGLVYKATMDDNSVVALLCILQNEVGLLCKFQHPNIISMVGYGVHENMGFIVYELMPNGSL EDLLHGIQLQLAGNDGQHKELDKKTHLVLAVACIVMAVIILLFASACFIFYCKLLHKRRRRNTKNPGPSRGSKLTWHMRLKIALDTARGLEYLHEFCKPA VIHRDLKSSNILLDSNFHAKLSDFGLAVADNTHNKSKLKLSGTVGYVAPEYLLDGELTEKSDVYAFGIVLLELLLGRRPVEKLAPAQCQSIVTWAMPKLT NREMLPNIVDPVIKDRIDDKYLFQVAAVAMLCVQPEPSYRPLITDVVHSLIPLLPVEMGGTLRTMSISGVVDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	0	1
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	1.7	0.8550
AT1G75060			unknown protein		Lus10018805 [exp]	2.4	0.8522
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	3.5	0.8476
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	5.5	0.8122
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	7.5	0.8358
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	9.5	0.8192
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	10.6	0.8282
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	12.8	0.8347
AT4G35320			unknown protein		Lus10013844 [exp]	13.6	0.7971
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	14.0	0.8322

Compare expression of checked genes

Lus10005345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.