Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32060 535 / 0 calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008807 [exp] 467 / 4e-161 AT4G32060 478 / 8e-166 calcium-binding EF hand family protein (.1.2) Lus10040000 [exp] 465 / 3e-160 AT4G32060 481 / 9e-167 calcium-binding EF hand family protein (.1.2) Lus10041027 [exp] 301 / 2e-100 AT4G32060 167 / 4e-49 calcium-binding EF hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023400 [exp] 581 / 0 AT4G32060 607 / 0.0 calcium-binding EF hand family protein (.1.2) Potri.018G118116 [exp] 288 / 9e-95 AT4G32060 278 / 2e-91 calcium-binding EF hand family protein (.1.2) Potri.018G118008 [exp] 206 / 3e-63 AT4G32060 217 / 3e-68 calcium-binding EF hand family protein (.1.2) Potri.018G118089 [exp] 129 / 1e-34 AT4G32060 140 / 2e-39 calcium-binding EF hand family protein (.1.2) Potri.015G066200 [exp] 44 / 0.0002 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005346 pacid=23154616 polypeptide=Lus10005346 locus=Lus10005346.g ID=Lus10005346.BGIv1.0 annot-version=v1.0 ATGCCTGCCTCTTTACGACGTCTTCGAAAATCTCCCTACTCCTATCGTCAACTCTCTGTTCTCCATTCCGCACGGCTCTCTAGTGCTTCTGCGCCCAATT CTTCCATTTCTCCGCTGTGTTTTACCGAGGCCGCTGCCGGCGCTTCCACTAACTCTCCGCGCAAAGAGAATCCGGGCAGTAGATCTCTCCTCAGGTGGAT CTCCGGTGCAGCCGCCTCTATAAGTGTGGGCGGATTATGCTACTGGTCACATACGCTTGACCCTGATCACACCATATTTCATTTCATCAAGAATCAGATA TGGTACCAGTCAACCACTGTCTCCGCCGGTGAAGCTGCTACCGCAGCTGGCGATATTCGTCGAGAATCCTCCTTGTTTCGCAAGATTTCGTTGCCGAATT ACACCTCCAAGTTCCTTGTTGGAGATTCCTACAGGAGAAAAGTGTTCTTCAAGTACGAGAAACGAATAAGGCTGCGAAGCCCGCCGGAAAAGGTCTTCGA GTATTTTGCGTCGCACAGAGCTCCAAATAGGGAATTATTCATACCGGCCGATGATTTGATGCGAGCGGTGGTTCCGGTTTTCCCTCCGTCCGAATCGAAC CTTGTTAGAGAAGGCTATTTGACAGGGGAAAGGAGTCCCGGAGAATTGCGCTGTTCTCCTTCTGAGTTCTTTATGCTGTTTGATGTCGACAATGATGGTC TTATATCTTTTAAAGAGTATATCTTCTTTGTAACACTGCTCAGCATTCCGGAGTCAAGTTTCTCTGTGGCTTTCAAGATGTTTGATATCGACAACAGTGG GGCTATCGATGAAGGCGAGTTTAAGAAAGTAATGTCACTGATGCGAGCTCATAACAGGCAAGGAGCTGTACATAAGGACGGGCTGCGCCCAGGGTTGAAG GTCAATGGTTCCGTTGACAATGGCGGTTTGTTGAAGTACTTCTTTGGGGATGATGAAAGTAAATGCCTCCAGTATGATAACTTCATGCAATTTATGAGGA ATTTACAGGATGAGATATTGAGACTGGAGTTTGCACACTATGACTACAAATCACGAGGAACCATATTGGCTAAGGATTTTGCGTTATCCATGGTTTCTTC TGCTGACTTGGGTCATCTAGATGGATTACTTCGTCGGGTGGATACATTAAACAATGACGGGCATCTACGCGACATGAAAATAACTTATGAGGAGTTCATG GATTTTGCCGAGTTACGTAAGAAGCTACGGCCTTTTTCTTTGGCCCTTTTTAGTTACGGGAAAGTAAATGGCTTGTTAACAAAAGAGGATTTCCAGCGAG CTGCATCTCAGGTCTGCGGCATTCCACTCTCCGATAATGTGGTGGATATCATATTCCACGTGTTTGATTTTGATGGTGATGGACATTTAAGCTCAAAGGA ATTTGTAAGAGTATTGCACAGACGAGAAAAGGAGATTGGTCAGCCCAGGGAAACAGGAATGATGGGAGCTCTGTTTTGCTTCCTGAACCAGTCCTCCTCG AATGACTCCTTTGAACGTCTGATTTCATGA
AA sequence Show only first row Show all	>Lus10005346 pacid=23154616 polypeptide=Lus10005346 locus=Lus10005346.g ID=Lus10005346.BGIv1.0 annot-version=v1.0 MPASLRRLRKSPYSYRQLSVLHSARLSSASAPNSSISPLCFTEAAAGASTNSPRKENPGSRSLLRWISGAAASISVGGLCYWSHTLDPDHTIFHFIKNQI WYQSTTVSAGEAATAAGDIRRESSLFRKISLPNYTSKFLVGDSYRRKVFFKYEKRIRLRSPPEKVFEYFASHRAPNRELFIPADDLMRAVVPVFPPSESN LVREGYLTGERSPGELRCSPSEFFMLFDVDNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDIDNSGAIDEGEFKKVMSLMRAHNRQGAVHKDGLRPGLK VNGSVDNGGLLKYFFGDDESKCLQYDNFMQFMRNLQDEILRLEFAHYDYKSRGTILAKDFALSMVSSADLGHLDGLLRRVDTLNNDGHLRDMKITYEEFM DFAELRKKLRPFSLALFSYGKVNGLLTKEDFQRAASQVCGIPLSDNVVDIIFHVFDFDGDGHLSSKEFVRVLHRREKEIGQPRETGMMGALFCFLNQSSS NDSFERLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	1.4	0.9566
AT4G17260			Lactate/malate dehydrogenase f...		Lus10004350 [exp]	2.0	0.9517
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	2.8	0.9222
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	5.2	0.9216
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	5.7	0.9181
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	6.5	0.9423
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	6.6	0.9423
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	7.4	0.9391
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	8.0	0.8826
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	9.5	0.9157

Compare expression of checked genes

Lus10005346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.