Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25265 591 / 0 unknown protein AT2G25260 518 / 0 unknown protein AT5G13500 459 / 1e-162 unknown protein AT3G01720 69 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041028 [exp] 724 / 0 AT5G25265 618 / 0.0 unknown protein Lus10009691 [exp] 458 / 3e-162 AT5G13500 541 / 0.0 unknown protein Lus10036037 [exp] 457 / 9e-162 AT5G13500 542 / 0.0 unknown protein Lus10014878 [exp] 66 / 2e-11 AT3G01720 1197 / 0.0 unknown protein Lus10022320 [exp] 64 / 7e-11 AT3G01720 1181 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023100 [exp] 650 / 0 AT5G25265 583 / 0.0 unknown protein Potri.006G258800 [exp] 641 / 0 AT5G25265 577 / 0.0 unknown protein Potri.001G028100 [exp] 473 / 5e-168 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 454 / 2e-160 AT5G13500 532 / 0.0 unknown protein Potri.001G275600 [exp] 448 / 4e-158 AT5G13500 543 / 0.0 unknown protein Potri.009G070000 [exp] 446 / 3e-157 AT5G13500 515 / 0.0 unknown protein Potri.001G336400 [exp] 72 / 1e-13 AT3G01720 1215 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005347 pacid=23154612 polypeptide=Lus10005347 locus=Lus10005347.g ID=Lus10005347.BGIv1.0 annot-version=v1.0 ATGGGGTGCGGCAATCTATTCTTCACGGCACTCATCAGTTTCTCGGTTGCTCTCATCACTTACAACATTCTAATCGCAGCTAATGCACCTCTCAAGCAGG ACCTTCCTGGTCCTTCCACACTTTCCTCCATCGACCCCATCATCCGGATGCCTAGGGACGAAAGATCCAGAAGATTCGGCGGATCTTCCACTCAGAAGAA GCAGCACCGTCTTTTCCACACCGCCGTTACTTCCTCCGATTCTGTTTACAACACATGGCAGTGTAGGGTGATGTACTACTGGTTCAAAAAGTTCCAGGAT GGTCCCAACTCCCAGATGGGAGGCTTCACCAGGATTTTGCATTCTGGTAAGCCCGATAAGTTCATGGACGAGATCCCCACTTTCGTTGCTCAGCCGCTTC CTTCTGGCATGGATCAGGGATATATAGTCCTCAACAGACCATGGGCATTTGTGCAATGGCTTCAGCAAGCGGATATCAGAGAAGATTATATACTGATGTC AGAGCCTGATCATATTATTGTTAAACCCATACCAAACTTGAGCAAAGATGGTCTTGGAGCTGCCTTCCCTTTCTTCTACATTGAGCCTAAAAAGTATGAA GCAGTACTGCGCAAGTATTTCCCTGAGGAGAAAGGTCCAGTCACTAATATTGATCCTATAGGGAATTCCCCCGTCATTGTAGGAAAGGAATCTCTTAAGA AGATAGCTCCCACTTGGATGAATGTATCTTTGGCAATGAAAAAAGATCCTGAAACGGACAAAGCCTTTGGTTGGGTCCTTGAAATGTATGCTTATGCTGT TGCATCTGCTCTTCACGATGTTGGCAATATTTTGTACAAGGACTTCATGATTCAGCCTCCATGGGATACAGAAGTTGGTACCAAGTTCATAATCCATTAT ACTTATGGATGTGACTATGACATGAAGGGCAAGTTAACTTATGGGAAAATAGGCGAATGGAGGTTTGACAAACGATCTTATGACACTGTTCCACCTCCAA GAAATCTTCCCCTGCCTCCGTCTGGTGTTCCTGAAAGTGTGGTGACACTGGTGAAAATGGTGAATGAAGCCACAGCAAACATTCCAAACTGGGGATCATA G
AA sequence Show only first row Show all	>Lus10005347 pacid=23154612 polypeptide=Lus10005347 locus=Lus10005347.g ID=Lus10005347.BGIv1.0 annot-version=v1.0 MGCGNLFFTALISFSVALITYNILIAANAPLKQDLPGPSTLSSIDPIIRMPRDERSRRFGGSSTQKKQHRLFHTAVTSSDSVYNTWQCRVMYYWFKKFQD GPNSQMGGFTRILHSGKPDKFMDEIPTFVAQPLPSGMDQGYIVLNRPWAFVQWLQQADIREDYILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE AVLRKYFPEEKGPVTNIDPIGNSPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHDVGNILYKDFMIQPPWDTEVGTKFIIHY TYGCDYDMKGKLTYGKIGEWRFDKRSYDTVPPPRNLPLPPSGVPESVVTLVKMVNEATANIPNWGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25265			unknown protein		Lus10005347 [exp]	0	1
AT5G25265			unknown protein		Lus10041028 [exp]	2.0	0.9030
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	2.6	0.9156
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	4.2	0.9053
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	4.5	0.9064
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10011837 [exp]	4.6	0.8826
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	7.9	0.8965
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10022009 [exp]	8.2	0.8717
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	11.4	0.8945
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	12.2	0.8986
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	12.6	0.8966

Compare expression of checked genes

Lus10005347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.