Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23740 275 / 1e-96 RPS11-BETA ribosomal protein S11-beta (.1) AT3G48930 273 / 1e-95 EMB1080 embryo defective 1080, Nucleic acid-binding, OB-fold-like protein (.1) AT4G30800 271 / 5e-95 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030113 [exp] 291 / 8e-103 AT5G23740 282 / 4e-99 ribosomal protein S11-beta (.1) Lus10041029 [exp] 291 / 1e-102 AT5G23740 281 / 6e-99 ribosomal protein S11-beta (.1) Lus10001681 [exp] 289 / 1e-101 AT5G23740 281 / 7e-99 ribosomal protein S11-beta (.1) Lus10008806 [exp] 289 / 5e-93 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115400 [exp] 281 / 5e-99 AT5G23740 271 / 5e-95 ribosomal protein S11-beta (.1) Potri.014G053300 [exp] 278 / 1e-97 AT5G23740 271 / 1e-94 ribosomal protein S11-beta (.1) Potri.002G140400 [exp] 278 / 1e-97 AT5G23740 266 / 8e-93 ribosomal protein S11-beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00366 [flax] [poplar] Ribosomal_S17 Ribosomal protein S17
Representative CDS sequence Show only first row Show all	>Lus10005348 pacid=23154625 polypeptide=Lus10005348 locus=Lus10005348.g ID=Lus10005348.BGIv1.0 annot-version=v1.0 ATGGCAGAGCAGACGGAGAAGGCTTTTCTGAAGCAGCCCAAGGTGTTCCTTAGTTCTAAGAAGTCTTCGAAGGGGAAGAGGCCCGGAAAAGGAGGCAACC GTTTCTGGAAGAGCATCGGCTTGGGTTTCAAGACTCCTAGAGAAGCAATTGAAGGGACGTACATTGATAAGAAATGTCCGTTCACTGGAACTGTTTCTAT CAGAGGCCGTATCATTGCGGGTACTTGTCACAGTGCCAAGATGATGAGAACCATTGTTGTGAGGCGCAATTACCTTCATTACATAAAGAAGTACCAAAGG TATGAGAAGAGGCATTCTAATATCCCAGCACATGTATCTCCATGCTTCCGTGTGAAGGAGGGTGACCATGTTATTATTGGGCAATGCAGGCCTCTATCGA AGACTGTAAGGTTCAACGTGCTGAAAGTGATTCCTGCTGGTTCTTCTGGCGGAGGGAAGAAAGCATTCACCGGCATGTGA
AA sequence Show only first row Show all	>Lus10005348 pacid=23154625 polypeptide=Lus10005348 locus=Lus10005348.g ID=Lus10005348.BGIv1.0 annot-version=v1.0 MAEQTEKAFLKQPKVFLSSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMMRTIVVRRNYLHYIKKYQR YEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	0	1
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	1.7	0.9024
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	2.0	0.9196
AT1G73940			unknown protein		Lus10010150 [exp]	2.2	0.8823
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	3.7	0.9041
AT3G07590			Small nuclear ribonucleoprotei...		Lus10016068 [exp]	4.6	0.8704
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	6.0	0.8893
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	6.3	0.8676
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	6.5	0.8747
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10017031 [exp]	6.7	0.8630
AT5G57120			unknown protein		Lus10001627 [exp]	8.8	0.8620

Compare expression of checked genes

Lus10005348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.