Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21000 147 / 2e-43 PLATZ transcription factor family protein (.1.2) AT1G76590 144 / 3e-42 PLATZ transcription factor family protein (.1) AT1G43000 142 / 7e-42 PLATZ transcription factor family protein (.1) AT2G27930 137 / 2e-40 PLATZ transcription factor family protein (.1) AT1G32700 133 / 1e-38 PLATZ transcription factor family protein (.1.2) AT4G17900 132 / 6e-38 PLATZ transcription factor family protein (.1.2) AT5G46710 121 / 7e-34 PLATZ transcription factor family protein (.1) AT1G31040 99 / 8e-25 PLATZ transcription factor family protein (.1) AT2G12646 98 / 2e-24 PLATZ transcription factor family protein (.1) AT3G60670 88 / 8e-21 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036044 [exp] 172 / 2e-53 AT2G27930 95 / 2e-24 PLATZ transcription factor family protein (.1) Lus10035554 [exp] 170 / 1e-52 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 168 / 3e-52 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 149 / 3e-44 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10014396 [exp] 146 / 3e-43 AT1G76590 202 / 7e-66 PLATZ transcription factor family protein (.1) Lus10002700 [exp] 146 / 2e-42 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 144 / 2e-42 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 147 / 3e-42 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 138 / 6e-40 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003200 [exp] 176 / 2e-55 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 172 / 5e-54 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 170 / 6e-53 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 167 / 9e-52 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 145 / 5e-43 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 144 / 2e-42 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 137 / 4e-40 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 137 / 8e-40 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 136 / 3e-39 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 132 / 7e-38 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10005350 pacid=23148513 polypeptide=Lus10005350 locus=Lus10005350.g ID=Lus10005350.BGIv1.0 annot-version=v1.0 ATGGTCCACATATTCCGGCGGCGGGGGTGGCTGAGNNNNNNNNNNGCGCGTGGGCGTTTGCGGGGGTGGCGGGACCCGCTGCTGGGGGCCTCATTTTTCG CCGGATGTTCCATCCACAAGGACGGGAACCGCACGAACCGCACTGAGCGCAACATGTTCTGCCTCGATTGCCACGCCGCCGGCGGTGCTTTCTGCGTTTC CTGCCGGTCGGCTCGCCACGAGGGCCACACGGTCATTCAAATAAGAAAGTCATCGTACCACCATGTGGTGAGGGTTTCTGAGGTAGAAGAGTTGATTGAC CTGAGCGGCATTCAGACTTACGTCATTAACAGTGCCAAAGTAGTGTTCTTAAACCAGCGTCCTCAGACGACCAAAAGCAGCAGCTCCTCGTCCTCATCCT CGTCGGCCGGTGGTGTTGCCGGCGGTTTCAACGGTGGCAGGTCTGTTACGCATTTCTGCCAGATATGTGGAAGAGGCCTCTTGGATGCTTCTCGCTTCTG TTCCTTGGGTTGCAAGCTGGCAAGACTCAAGAGGAATGGCGATACAAGCTTCAAGCTTGTGACTGGGAACAACGGCGGCGAAGAAGACAGAGCAATGTAT GAATCTCCAACTCCGTCGCCGGCTCCAAGTAGCCCACCGCCGCCGCCACTCATGAGGTCGACCGGACTTAGCTACAGAAAAAGGCCGAGGAAAGGGATCC CTATTCGGGCCGCATTATTCCGTTAG
AA sequence Show only first row Show all	>Lus10005350 pacid=23148513 polypeptide=Lus10005350 locus=Lus10005350.g ID=Lus10005350.BGIv1.0 annot-version=v1.0 MVHIFRRRGWLXXXXARGRLRGWRDPLLGASFFAGCSIHKDGNRTNRTERNMFCLDCHAAGGAFCVSCRSARHEGHTVIQIRKSSYHHVVRVSEVEELID LSGIQTYVINSAKVVFLNQRPQTTKSSSSSSSSSSAGGVAGGFNGGRSVTHFCQICGRGLLDASRFCSLGCKLARLKRNGDTSFKLVTGNNGGEEDRAMY ESPTPSPAPSSPPPPPLMRSTGLSYRKRPRKGIPIRAALFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	0	1
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	1.0	1.0000
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	1.4	1.0000
					Lus10035508 [exp]	1.7	1.0000
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	2.0	1.0000
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	2.8	0.9974
					Lus10000882 [exp]	3.0	0.9894
					Lus10028027 [exp]	3.3	0.9410
					Lus10012269 [exp]	3.9	1.0000
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	4.2	1.0000
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	4.6	1.0000

Compare expression of checked genes

Lus10005350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.