Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 1060 / 0 Threonyl-tRNA synthetase (.1) AT2G04842 420 / 2e-138 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G17960 396 / 9e-132 Threonyl-tRNA synthetase (.1) AT1G18130 196 / 7e-59 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021402 [exp] 1357 / 0 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 1132 / 0 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 1058 / 0 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10012360 [exp] 403 / 2e-131 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 274 / 6e-87 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 170 / 1e-49 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10030642 [exp] 95 / 3e-23 AT1G17960 79 / 9e-19 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 77 / 3e-16 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030584 [exp] 45 / 0.0001 AT3G54630 471 / 7e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 1165 / 0 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 886 / 0 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 411 / 2e-134 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.010G096550 [exp] 207 / 2e-62 AT1G17960 219 / 2e-69 Threonyl-tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10005351 pacid=23148512 polypeptide=Lus10005351 locus=Lus10005351.g ID=Lus10005351.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCAGCCGGCGCCGCCGGTGCTCATCCGAAGGACGAAGAGTATCTGAACGCAGTGATTCCGAAACGCATCCAGCTGTTCCAGTCTATCCAGG AGCAGCAGAAGCTCGAGCTGGATTCCCGCTCTCACGATCCCATCAAGATTACTTTGCCGAATGGGACGGTGAAGGAAGGTAAGAGGTGGTCCTCGACCCC TTGGGACATTGCGAAGGAGATCTCCAAGAGCTTGGCGTCCAGTGCATTGATATCTCAAGTCAATGGAGTTCTATGGGACATGAAACGGCCGTTGGAAAGT GATTGTGAGCTGAAATTGTTTACCTTCGACGATGATGAAGGGCGTGATACGTTCTGGCACTCCAGCGCTCATATTCTTGGTCAGTCACTGGAACAGACGT ATGGTTGCAAGCTCTGCATTGGACCTTGCACCACCAGAGGGGAGGGATTCTATTATGATGCATTCTACGGAGAACTGGGTTTGAATGAGGATCACTTCAA GAAAATTGAAGCTGGAGCCTCAAAAGCTGCCAAGGAAGCCCAAGACTTTGAGCGTATTGAAGTCACCAAGGAACAGGCCCTCGAGATGTTCTCCGAGAAC AACTTTAAGATTGAAATCATAAATGATCTGCCTGGGGACAAAACTATTACCGTGTACAGGTGTGGTCCATTGGTTGATCTGTGTCGTGGTCCGCATATCC CAACCACATCTTCTGTAAAAGCACTTGCATGCTTGAAGGCTTCTTCTGCCTATTGGAGGGGGAATAAAGATCGTGAAAGTTTGCAGAGAGTCTATGGCAT ATCGTATCCTGACCAGAAACGACTGAAGGAGTATTTGCACAATCTGGAAGAAGCGAAGAAGTATGATCACAGACTATTGGGGACTAAGCAGGAGCTTTTC TTCTGCCATCCTCTAAGCCCTGGAAGTTGGTTCTTCCTTCCTCATGGGACGCGGATATACAACAAACTGCAAGAATTTATAAAATCTGAATATAGAAAGA GGGGTTATGATGAGGTTAAATCCCCAAATATGTACAACATGAAACTCTGGGAGACATCGGGACACGCTGCCAACTACAGGGAAAACATGTTCTTGCTTGA TATCGAAAAGCAAGAATTTGGACTGAAACCGATGAATTGTCCTGGGCATTGTTTGATGTTCCAGCACAGAGTTCGATCTTACCGAGAACTTCCTCTTCGT CTGGCTGATTTCGGTGCTTTGCATCGAAATGAGGCTAGTGGTGCGCTCACAGGATTAACTCGTGTTCGGAGGTTTCAACAGGATGATGCACATATCTTCT GCAGGCAGAGCCAGATAAAAGATGAAGTTAGAGGTGTCTTGGAATTCATTGATTACGCATATAAAGTATTTGGATTCACATATGAGCTGAAGCTCTCCAC GAGGCCAGAAAAATATATGGGGAACCTGGAAACATGGAAGGAAGCCGAGGATGCTCTGACTGAAGCGTTGAATGAGTTTGGGAAGCCTTGGCTGATAGAT GAAGGCGATGGTGCTTTTTACGGTCCTAAGATAGATATTAGCGTATCTGATGCTTTGAAAAGGAAATTCCAGTGTGCCACGTTGCAGCTTGATTTCCAAC TTCCAATAAGTTTCAAGTTGGAGTACTCGGCAGAGGATGAAACCAAGATAGAAAAACCAGTGATGATACACAGAGCCATTCTGGGATCTGTGGAACGTAT GTTTGCTATCCTGCTGGAGCATTATAAGGGGAAGTGGCCTTTCTGGCTCAGTCCTCGTCAAGCAATTGTCTGCCCTGTCTCTGCCAAGTCTATGGACTAT GCTAAACAAGTACGAGATCAGATTCATGCAGCAGGATATTACGTTGATGCCGATGTCACTGACAGAAAGATCCAGAAAAAGATCAGAGAAGCCCAGCTAG CACAGTACAACTACATCTTAGTCGTCGGCGAGGAGGAAGCCAACACTGGCCAAGTGAGTGTGCGAAAGAGAGATGAGTCAGAAAAGGCAAAGCACCCGGT GAAGAGCATCGAAGCCTTGCTGCAAGATTTCAAGGATGAAACTGATGCTGCATTTCATTAA
AA sequence Show only first row Show all	>Lus10005351 pacid=23148512 polypeptide=Lus10005351 locus=Lus10005351.g ID=Lus10005351.BGIv1.0 annot-version=v1.0 MAAPAGAAGAHPKDEEYLNAVIPKRIQLFQSIQEQQKLELDSRSHDPIKITLPNGTVKEGKRWSSTPWDIAKEISKSLASSALISQVNGVLWDMKRPLES DCELKLFTFDDDEGRDTFWHSSAHILGQSLEQTYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKKIEAGASKAAKEAQDFERIEVTKEQALEMFSEN NFKIEIINDLPGDKTITVYRCGPLVDLCRGPHIPTTSSVKALACLKASSAYWRGNKDRESLQRVYGISYPDQKRLKEYLHNLEEAKKYDHRLLGTKQELF FCHPLSPGSWFFLPHGTRIYNKLQEFIKSEYRKRGYDEVKSPNMYNMKLWETSGHAANYRENMFLLDIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLR LADFGALHRNEASGALTGLTRVRRFQQDDAHIFCRQSQIKDEVRGVLEFIDYAYKVFGFTYELKLSTRPEKYMGNLETWKEAEDALTEALNEFGKPWLID EGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPISFKLEYSAEDETKIEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSAKSMDY AKQVRDQIHAAGYYVDADVTDRKIQKKIREAQLAQYNYILVVGEEEANTGQVSVRKRDESEKAKHPVKSIEALLQDFKDETDAAFH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	0	1
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	2.4	0.9221
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	4.9	0.9073
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10043473 [exp]	5.4	0.9242
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	6.5	0.8990
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	8.1	0.9097
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	9.6	0.9164
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031839 [exp]	10.0	0.8875
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	10.5	0.8857
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	10.6	0.9014
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	11.8	0.9056

Compare expression of checked genes

Lus10005351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.