Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08190 1431 / 0 ZIP2, ATVPS41, ATVAM2 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1) AT4G00800 46 / 0.0001 SETH5 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021401 [exp] 1802 / 0 AT1G08190 1431 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G212700 [exp] 1567 / 0 AT1G08190 1477 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1) Potri.009G002400 [exp] 1529 / 0 AT1G08190 1440 / 0.0 ZIGZAG SUPPRESSOR 2, vacuolar protein sorting 41 (.1) Potri.007G098000 [exp] 44 / 0.0003 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10005352 pacid=23148506 polypeptide=Lus10005352 locus=Lus10005352.g ID=Lus10005352.BGIv1.0 annot-version=v1.0 ATGGCTCCGATTCCGCCGGAGAACGGCGTAGACGGTGACGGCGAGCGGGAGGAAGAGGAAGACGACGACGAAGATGAAGAAGAAGAAGACGAAGGCGAAG GCGAAGGCGAAGAAGAAGAGGACGAGGAGGAGCCGAGGCTCAAGTACCAGCGAATGGGCGGCAGCATACCGTCTCTGCTCTCCAACGATGCGGCGTCGTG TATAGCGGTGGCGGAGCGCATGATCGCGCTCGGTACGCGCGAAGGAACCGTCCACATACTTGATTTTCTTGGAAATCAGGTTAAGGAATTCCCTGCTCAC ACTGCTGCAGTGAATGATCTAAGCTTTGATGTAGAAGGAGAATACATTGGAAGCTGTTCAGATGATGGCTCGGTTATAATAAATAGCCTCTTCACTGATG AAAAAATGAAGTTTGAGTATCATCGTCCAATGAAGGCCATTGCACTGGATCCCGAATATTCAAGAAAAGCCTCTAAGAGATTTGTTGCTGGTGGCCTTGC TGGTCAGTTGTATTTAAACACAAAGAAATGGCTGGGTTACCGTGACCAGGTCTTGCACTCTGGGGAAGGCCCAATACATGCTGTGAAGTGGAGAACAAAT CTCATTGCTTGGGCCAATGACACAGGAGTCAAAGTATATGATGCTGTCAATGATCAGCGCATAACGTTTATTGGAAGGCCACGAGGAAGTCCTCGCCCCG AGCTTCTTCTTCCTCATCTTGTTTGGCAGGGTGACACATTGTTGGTTATTGGTTGGGGAACATATGTGAAAATTGTGTCGATAAAGGGACACCAGTTCGG GGATTCCAATGGAACATTTGCGAGAACAATGTCAAGTAGGAACCAAGTGGACATTGTTGCATCTTTTCAGACTAGCTATTACATTTCAGGCATTGCTCCA TTTGGCGACTCTTTGGTTGTTTTGGCTTATATTCATGGGGAAGACGACAGTGAGAAAGACTTCAGCAGTACCATTCCATCAAGACAGATTAATGCACAAA GGCCTGAAATCCGTGTCGTCACTTGGAATAATGATGAACTTTCAACAGATGCTCTATCTGTCCATGGCTTCGAGCATTACAAAGCAAAAGACTATGCTCT TGCTCATGCTCCTTTCTCAGGAAGCAGTTATGGTGGTGGTCAGTGGGCTGCTGGTGATGAGCCAATGTACTATATTGTTTCCCCAAAGGATGTGGTTATA GCAAAACCAAGGGATGCTGAAGACCATATTTCATGGCTTCTACAACATGGTTACCACGAAAAAGCTTTAGCAGCAGTTGAAGCAGGCCAAGGCCGTAGTG AACTCCTTGATGAGGTGGGAGCAAGATATCTTGACCATTTAATTGTGGAGAGGAAGTATGCTGAGGCCGCATCCCTTTGTCCTAAAGTTTTGCGGGGATC TGCTTCGGCATGGGAGAGATGGGTTTTCCATTTCGCTCAACTCCGTCAGCTCCCTGTACTGGTACCATATATACCAACAGAGAACCCAAAACTGCGTGAC ACTGCTTACGAGGTTGCCCTTGTAGCATTGGCTACAAATCAATCTTTCCATAAGGATCTTTTGTCAACTGTTAATTCGTGGCCATCTAAAATATACTCTG CACCGACAGTTATAGCAGCTATAGAACCTCAGATAAATACTTCTTCCATGAGTGACGCACTCAAAGAGGCTCTAGCTGAGTTGTATGTAGTAGATGGGCA ATATGAGAAGGCTTTTTCGCTATATGCAGACCTTTTGAAACCTGAATTATTTGATTTTATTGAAAAGCACAACTTACAAGATGTCATCCGCGAAAAGGTT GTCCAGCTAATGATGCTTGACTGTAAGCGTGCAGTTTCTCTATTCATGCAAAACAGGGAAATGATATCTCCATTTGAAGTTGTCTCGCAACTGCTGTCCT CAAAAGCTCAATGTGATTCACGATATTTCTTGCATTCATATCTACATGCACTATTCGAAGCTAATCCACACGCTGGGAAGGATTTCCACGATATGCAGGT AGAGCTTTACGCAGATTACGATCCCAAAATGTTGCTCCCATTCCTACGCAGCAGTCAACATTACAAACTTGAGAAGGCGTTGGATATTTGTGTCAAAAGA GATCTCTTAAGGGAGCAAGTCTTCATCCTTGGAAGGATGGGGAACACGAAAAAGGCGTTAGCTGTTATCATCAACAAATTGGGGGATATAGAAGAGGCTG TAGAATTTGTGACAATGCAGCACGATGATGACCTTTGGGAAGAACTGATCAAGCAGTGTCTTAACAAGCCTGAAATGGTTGGAGTGTTGTTGGAGCACAC TGTTGGCAATCTAGACCCTTTGTATATCGTAAACATCGTACCCAACGGCTTGGAGATTCCACGGCTCAGGGATCGTCTGGTGAAGATCATCACCGATTAC AGAACCGAAACATCCCTCAGACATGGCTGTAACGACATTCTCAAGGCCGATTGCGTGAACCTCTTGGTCAAATACTTCAACGAAGCGAAGAGGGCGATCT GCCTGGGAGGCGAGGAAGACGACTCGAGAACGAAAAGGGATGCTCGTCGAGACTCCCACGCTACGGCAGACAGAATATTGAACATGAGGAACATGGATGT CAAGTCGAAAACAAGAGGGGATGCGAGGTGCTGCATGTGTTTTGATCCTTTCTCGATACAGAACGTCTCGGTCATCGCCTTCTTCTGCTGCCATGCTTAC CACCAGAGCTGTCTCGCGGATTCCATGAACTCCATCGTCAATAAGGGATCAGCTCAAGACGATGGTCATGATGATGAGGACGATGACGAGGATGATGAGG ACGATGTTGAGGACCGGTCGAGCGGCCATCGATTGAGATGTATTCTATGCACTACGGCTGCGAGTTGA
AA sequence Show only first row Show all	>Lus10005352 pacid=23148506 polypeptide=Lus10005352 locus=Lus10005352.g ID=Lus10005352.BGIv1.0 annot-version=v1.0 MAPIPPENGVDGDGEREEEEDDDEDEEEEDEGEGEGEEEEDEEEPRLKYQRMGGSIPSLLSNDAASCIAVAERMIALGTREGTVHILDFLGNQVKEFPAH TAAVNDLSFDVEGEYIGSCSDDGSVIINSLFTDEKMKFEYHRPMKAIALDPEYSRKASKRFVAGGLAGQLYLNTKKWLGYRDQVLHSGEGPIHAVKWRTN LIAWANDTGVKVYDAVNDQRITFIGRPRGSPRPELLLPHLVWQGDTLLVIGWGTYVKIVSIKGHQFGDSNGTFARTMSSRNQVDIVASFQTSYYISGIAP FGDSLVVLAYIHGEDDSEKDFSSTIPSRQINAQRPEIRVVTWNNDELSTDALSVHGFEHYKAKDYALAHAPFSGSSYGGGQWAAGDEPMYYIVSPKDVVI AKPRDAEDHISWLLQHGYHEKALAAVEAGQGRSELLDEVGARYLDHLIVERKYAEAASLCPKVLRGSASAWERWVFHFAQLRQLPVLVPYIPTENPKLRD TAYEVALVALATNQSFHKDLLSTVNSWPSKIYSAPTVIAAIEPQINTSSMSDALKEALAELYVVDGQYEKAFSLYADLLKPELFDFIEKHNLQDVIREKV VQLMMLDCKRAVSLFMQNREMISPFEVVSQLLSSKAQCDSRYFLHSYLHALFEANPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYKLEKALDICVKR DLLREQVFILGRMGNTKKALAVIINKLGDIEEAVEFVTMQHDDDLWEELIKQCLNKPEMVGVLLEHTVGNLDPLYIVNIVPNGLEIPRLRDRLVKIITDY RTETSLRHGCNDILKADCVNLLVKYFNEAKRAICLGGEEDDSRTKRDARRDSHATADRILNMRNMDVKSKTRGDARCCMCFDPFSIQNVSVIAFFCCHAY HQSCLADSMNSIVNKGSAQDDGHDDEDDDEDDEDDVEDRSSGHRLRCILCTTAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	0	1
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	1.4	0.8064
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	3.0	0.8015
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10031398 [exp]	7.3	0.8120
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10030288 [exp]	12.1	0.7646
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	14.1	0.7807
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	14.1	0.7918
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	17.0	0.7540
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	17.5	0.7685
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	17.8	0.8000
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	18.7	0.7507

Compare expression of checked genes

Lus10005352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.