Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 553 / 0 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 416 / 1e-141 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 398 / 3e-134 Serine carboxypeptidase S28 family protein (.1) AT3G28680 162 / 4e-47 Serine carboxypeptidase S28 family protein (.1) AT2G18080 119 / 1e-28 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36190 115 / 2e-27 Serine carboxypeptidase S28 family protein (.1) AT4G36195 105 / 4e-24 Serine carboxypeptidase S28 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021400 [exp] 958 / 0 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 518 / 0 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 494 / 9e-172 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10011603 [exp] 420 / 1e-142 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10021325 [exp] 370 / 4e-123 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10017002 [exp] 315 / 3e-103 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 182 / 2e-52 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 96 / 1e-20 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 58 / 6e-09 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213500 [exp] 654 / 0 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 652 / 0 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 568 / 0 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 568 / 0 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 561 / 0 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 540 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213400 [exp] 535 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213200 [exp] 533 / 0 AT5G22860 518 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 503 / 6e-176 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.006G207900 [exp] 419 / 2e-142 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10005354 pacid=23148502 polypeptide=Lus10005354 locus=Lus10005354.g ID=Lus10005354.BGIv1.0 annot-version=v1.0 ATGGAACCAAAACCACTACTACCACTCCTATCCACATCACTGCTCATTCTCCTAACATCTCTCTCAACCCAATTCATCCCAACACAGTCAAAATTCTCCA AACTTGGTGTCCAACGAAGAACCCCAAGTAGTAGGCAAACTAGTTATAATAACAAGTTTGATGAGCAATCCGTGGAGGATTCGGATTACGTGACGTATTA CTACAACCAGACGCTTGACCACTTCAGCTACAAGCCTGAGAGTTACATGACCACTTTCAAGCAGAGGTATGTTGTGAACACCAAGTATTGGGGGGGTGTC GATACCCACTCTCCGATTTTTGTCTACTTTGGACACGAGGGCCCAATTGATTCCGTGTGGACTTACATCGGGTTCCTTACTGAGAATGCTCCTCGGTTCA AGGCTTTGATCTTATATATCGAGCACCGATACTACGGTGAGTCGATCCCATTCGGGTCGTGGGAGGAAGCATCGGCGAATGCTAGCTCACTTGGATACTT AAACTCAGCTCAGGCAATCGCAGATTATGCCGCAATCATCCTCCACGTCAAGCAAAAATATTCGGCTCGAAACTCGCCGGTGATAGTCATCGGAGGATCC TACAGTGGAATGTTGGCGGCTTGGTTCCGTCTCAAGTACCCTCACATTGCGGTCGGGGCGCTGGCTTCATCGGCTCCGATACTCTACTTCGATGGCGGAG TTGCACCCGGGGACGGCTACTACTCTATCGTAACAAAGGACTTCAAAGAAGCTAGTAAGAGCTGCTACGAGACAATCAGCAGGTCGTGGGTTGAAATTGA AAGAGTGGCATCCCAACCTAATGGCCTTTCATTCCTCAGCAAGAAATTCAAGACTTGCCGTCCTTTACGAAGGAGCTTCGATCTGAAGGATTACTTGGAC TCGATATACGCTGACGCTGCGCAGTACAACGAGCCACCGGAATACCCAGTCGAAATCGTCTGTCGTGCCATCGACGGTGCCGATAAAGGTGATGTTTTGG GACAGATACTCGCCGGCGTCGTTGCTTACATGGGGAATGATTCATGTTACGATGTCTTAGACTTTAGCCCTCCATCCGCTTCATCTCTTGCTTGGAGGTG GCAGGTGTGTAGCGAGTTAGTGTTCCAAATAGGGCACGATAGCAACACGATGTTCCCGCCGGAACCATTCAGTCTCAACAGCTTTATCAAAAAATGCAAG ACTACTTTTGGTGTGCTCCCTCAGCCTCACTGGGTCACCACCTTCTACGGAGGCCATGATTTGAAACTAGCTCTACATAGATTTGCTAGCAACATCATCT TCTCAAATGGGCTGAAAGATCCTTACAGCAGTGGCGGGGTATTGGAGAACATATCAGATAGCATTATTGCTTTGTCGACGACTCATGGATCTCATTGCTT GGATATACAAACATCAAGACCAAGTGATCCGGATTGGTTAATCAACCAGAGGAAAACCGAGTTGGAGATTATTGGTCGGTGGCTTTCCAAGTACTACACA GATCTTGTTCAGTTCAAATGA
AA sequence Show only first row Show all	>Lus10005354 pacid=23148502 polypeptide=Lus10005354 locus=Lus10005354.g ID=Lus10005354.BGIv1.0 annot-version=v1.0 MEPKPLLPLLSTSLLILLTSLSTQFIPTQSKFSKLGVQRRTPSSRQTSYNNKFDEQSVEDSDYVTYYYNQTLDHFSYKPESYMTTFKQRYVVNTKYWGGV DTHSPIFVYFGHEGPIDSVWTYIGFLTENAPRFKALILYIEHRYYGESIPFGSWEEASANASSLGYLNSAQAIADYAAIILHVKQKYSARNSPVIVIGGS YSGMLAAWFRLKYPHIAVGALASSAPILYFDGGVAPGDGYYSIVTKDFKEASKSCYETISRSWVEIERVASQPNGLSFLSKKFKTCRPLRRSFDLKDYLD SIYADAAQYNEPPEYPVEIVCRAIDGADKGDVLGQILAGVVAYMGNDSCYDVLDFSPPSASSLAWRWQVCSELVFQIGHDSNTMFPPEPFSLNSFIKKCK TTFGVLPQPHWVTTFYGGHDLKLALHRFASNIIFSNGLKDPYSSGGVLENISDSIIALSTTHGSHCLDIQTSRPSDPDWLINQRKTELEIIGRWLSKYYT DLVQFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	0	1
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	1.7	0.9765
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	2.4	0.9735
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	3.5	0.9628
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	3.7	0.8971
					Lus10021406 [exp]	4.6	0.9723
					Lus10021407 [exp]	4.9	0.9702
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	5.5	0.9647
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	5.7	0.9456
					Lus10005902 [exp]	6.2	0.8225
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024621 [exp]	6.6	0.8724

Compare expression of checked genes

Lus10005354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.